Strain Fitness in Shewanella amazonensis SB2B around Sama_2173

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,626,968	+		Sama_2172	0.13	-1.3
2,626,992	+		Sama_2172	0.16	-3.3
2,626,992	+		Sama_2172	0.16	-1.6
2,626,993	-		Sama_2172	0.16	-1.9
2,627,063	+		Sama_2172	0.23	-2.1
2,627,077	-		Sama_2172	0.24	-2.9
2,627,077	-		Sama_2172	0.24	+0.6
2,627,166	+		Sama_2172	0.33	-0.3
2,627,183	+		Sama_2172	0.35	-3.3
2,627,183	+		Sama_2172	0.35	-2.2
2,627,183	+		Sama_2172	0.35	-2.6
2,627,183	+		Sama_2172	0.35	-2.9
2,627,184	-		Sama_2172	0.35	-1.8
2,627,251	+		Sama_2172	0.42	-2.9
2,627,251	+		Sama_2172	0.42	-2.2
2,627,338	-		Sama_2172	0.51	-2.7
2,627,341	-		Sama_2172	0.51	+0.2
2,627,394	+		Sama_2172	0.57	-0.8
2,627,494	+		Sama_2172	0.67	-2.8
2,627,495	-		Sama_2172	0.67	-3.1
2,627,495	-		Sama_2172	0.67	-0.8
2,627,497	-		Sama_2172	0.67	-1.1
2,627,620	+		Sama_2172	0.80	-1.8
2,627,620	+		Sama_2172	0.80	-2.8
2,627,621	-		Sama_2172	0.80	-2.7
2,627,735	-				-2.2
2,627,753	+				-0.8
2,627,766	-				-3.9
2,627,873	+				+0.7
2,627,922	+				-1.3
2,627,922	+				-1.3
2,627,922	+				-1.3
2,627,923	-				-3.0
2,627,923	-				-3.3
2,627,923	-				-1.6
2,627,924	+				-1.1
2,628,017	-				-1.6
2,628,104	+		Sama_2173	0.14	-2.2
2,628,105	-		Sama_2173	0.14	-2.1
2,628,120	+		Sama_2173	0.14	-1.3
2,628,120	+		Sama_2173	0.14	-1.8
2,628,121	-		Sama_2173	0.14	-1.3
2,628,121	-		Sama_2173	0.14	-1.5
2,628,121	-		Sama_2173	0.14	-2.5
2,628,121	-		Sama_2173	0.14	-2.7
2,628,121	-		Sama_2173	0.14	-1.8
2,628,148	+		Sama_2173	0.16	-1.1
2,628,149	-		Sama_2173	0.16	-1.6
2,628,181	+		Sama_2173	0.17	-4.3
2,628,391	+		Sama_2173	0.27	-0.8
2,628,392	-		Sama_2173	0.27	-1.9
2,628,392	-		Sama_2173	0.27	-3.1
2,628,478	-		Sama_2173	0.31	-2.7
2,628,659	+		Sama_2173	0.40	-1.8
2,628,659	+		Sama_2173	0.40	-1.9
2,628,660	-		Sama_2173	0.40	-3.6
2,628,973	-		Sama_2173	0.55	-0.3
2,628,973	-		Sama_2173	0.55	-1.8
2,629,004	+		Sama_2173	0.56	-1.0
2,629,004	+		Sama_2173	0.56	+0.2
2,629,023	+		Sama_2173	0.57	-2.2
2,629,024	-		Sama_2173	0.57	-3.1
2,629,025	+		Sama_2173	0.57	-1.6
2,629,527	-		Sama_2173	0.81	-1.3
2,629,527	-		Sama_2173	0.81	-2.6
2,629,563	-		Sama_2173	0.83	-1.1
2,629,762	+				-1.6
2,629,763	-				-2.6
2,629,763	-				-1.9
2,629,853	+				-3.2
2,629,854	-				-1.1
2,630,038	+				-3.1
2,630,038	+				-2.4
2,630,039	-				-2.1
2,630,062	-				-1.6
2,630,181	+		Sama_2174	0.16	-0.8
2,630,182	-		Sama_2174	0.16	-3.6
2,630,227	+		Sama_2174	0.19	+0.2
2,630,228	-		Sama_2174	0.19	-1.3
2,630,228	-		Sama_2174	0.19	-0.8
2,630,303	+		Sama_2174	0.24	-2.8
2,630,304	-		Sama_2174	0.24	-2.8
2,630,304	-		Sama_2174	0.24	-1.3
2,630,309	+		Sama_2174	0.24	-0.1
2,630,309	+		Sama_2174	0.24	-2.2
2,630,363	+		Sama_2174	0.28	-2.7
2,630,364	-		Sama_2174	0.28	-0.8
2,630,364	-		Sama_2174	0.28	-0.8
2,630,364	-		Sama_2174	0.28	-1.1
2,630,364	-		Sama_2174	0.28	-1.6
2,630,513	+		Sama_2174	0.37	-2.8
2,630,577	+		Sama_2174	0.41	-2.1
2,630,577	+		Sama_2174	0.41	-1.6
2,630,577	+		Sama_2174	0.41	-1.5
2,630,578	-		Sama_2174	0.41	-3.1
2,630,578	-		Sama_2174	0.41	-2.7
2,630,578	-		Sama_2174	0.41	-2.6
2,630,605	+		Sama_2174	0.42	-3.2
2,630,606	-		Sama_2174	0.43	-3.1
2,630,759	-		Sama_2174	0.52	-1.6
2,630,857	+		Sama_2174	0.58	-3.6
2,630,857	+		Sama_2174	0.58	-1.8
2,630,858	-		Sama_2174	0.58	-0.8
2,630,858	-		Sama_2174	0.58	-1.8
2,630,858	-		Sama_2174	0.58	-1.6
2,630,858	-		Sama_2174	0.58	-2.9