Strain Fitness in Shewanella amazonensis SB2B around Sama_2158

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,606,542	+		Sama_2157	0.17	-0.1
2,606,542	+		Sama_2157	0.17	-1.0
2,606,566	+		Sama_2157	0.19	-0.3
2,606,581	+		Sama_2157	0.20	+0.1
2,606,581	+		Sama_2157	0.20	-0.2
2,606,582	-		Sama_2157	0.20	+1.1
2,606,582	-		Sama_2157	0.20	+0.8
2,606,582	-		Sama_2157	0.20	-0.3
2,606,617	+		Sama_2157	0.23	+0.0
2,606,618	-		Sama_2157	0.23	-0.5
2,606,618	-		Sama_2157	0.23	-0.6
2,606,753	-		Sama_2157	0.35	-0.5
2,606,753	-		Sama_2157	0.35	+2.2
2,606,772	+		Sama_2157	0.37	+0.5
2,606,773	-		Sama_2157	0.37	+0.8
2,606,773	-		Sama_2157	0.37	+0.8
2,606,773	-		Sama_2157	0.37	-1.1
2,606,773	-		Sama_2157	0.37	-2.8
2,606,773	-		Sama_2157	0.37	+0.8
2,606,773	-		Sama_2157	0.37	-0.9
2,606,773	-		Sama_2157	0.37	-0.3
2,606,773	-		Sama_2157	0.37	-0.7
2,606,773	-		Sama_2157	0.37	-0.2
2,606,773	-		Sama_2157	0.37	-0.6
2,606,868	+		Sama_2157	0.46	-0.3
2,606,869	-		Sama_2157	0.46	+1.2
2,606,915	+		Sama_2157	0.50	-1.3
2,606,968	+		Sama_2157	0.55	-1.9
2,606,968	+		Sama_2157	0.55	+0.8
2,606,968	+		Sama_2157	0.55	-1.1
2,606,968	+		Sama_2157	0.55	-0.9
2,606,969	-		Sama_2157	0.55	-0.9
2,607,028	+		Sama_2157	0.60	-2.5
2,607,036	+		Sama_2157	0.61	+0.6
2,607,037	-		Sama_2157	0.61	-0.3
2,607,177	-		Sama_2157	0.73	-1.9
2,607,190	+		Sama_2157	0.74	-1.6
2,607,191	-		Sama_2157	0.74	+0.1
2,607,215	-		Sama_2157	0.77	-0.3
2,607,215	-		Sama_2157	0.77	+0.2
2,607,225	+		Sama_2157	0.77	-3.6
2,607,225	+		Sama_2157	0.77	-1.0
2,607,226	-		Sama_2157	0.78	+0.4
2,607,226	-		Sama_2157	0.78	+0.2
2,607,226	-		Sama_2157	0.78	-1.6
2,607,228	+		Sama_2157	0.78	+0.2
2,607,229	-		Sama_2157	0.78	+0.3
2,607,229	-		Sama_2157	0.78	-1.2
2,607,229	-		Sama_2157	0.78	-1.2
2,607,229	-		Sama_2157	0.78	-0.5
2,607,229	-		Sama_2157	0.78	-0.5
2,607,310	+		Sama_2157	0.85	-1.3
2,607,311	-		Sama_2157	0.85	-0.3
2,607,311	-		Sama_2157	0.85	+0.8
2,607,311	-		Sama_2157	0.85	-0.8
2,607,311	-		Sama_2157	0.85	+1.8
2,607,311	-		Sama_2157	0.85	-0.3
2,607,311	-		Sama_2157	0.85	+1.5
2,607,311	-		Sama_2157	0.85	+0.1
2,607,312	+		Sama_2157	0.85	+0.0
2,607,312	+		Sama_2157	0.85	+0.9
2,607,313	-		Sama_2157	0.85	+0.6
2,607,313	-		Sama_2157	0.85	-1.3
2,607,313	-		Sama_2157	0.85	-0.0
2,607,320	+		Sama_2157	0.86	+0.5
2,607,320	+		Sama_2157	0.86	-1.0
2,607,321	-		Sama_2157	0.86	+2.6
2,607,321	-		Sama_2157	0.86	+0.5
2,607,321	-		Sama_2157	0.86	-1.1
2,607,416	+				+1.0
2,607,469	+				+0.6
2,607,469	+				+0.5
2,607,491	+				+1.2
2,607,492	-				+0.3
2,607,492	-				-0.5
2,607,494	+				-1.9
2,607,495	-				+0.2
2,607,495	-				-0.5
2,607,500	-				-1.1
2,607,507	-				+0.7
2,607,516	+				+0.9
2,607,516	+				+2.6
2,607,517	-				-0.4
2,607,550	-				+0.8
2,607,550	-				+0.2
2,607,627	+				-0.8
2,607,628	-				+0.4
2,607,635	+				+1.2
2,607,636	-				+0.2
2,607,754	-		Sama_2158	0.19	+0.8
2,607,780	+		Sama_2158	0.22	-1.1
2,607,780	+		Sama_2158	0.22	-1.5
2,607,780	+		Sama_2158	0.22	+0.5
2,607,862	-		Sama_2158	0.29	+0.2
2,607,865	+		Sama_2158	0.29	-0.2
2,607,866	-		Sama_2158	0.29	-0.8
2,607,899	+		Sama_2158	0.32	-1.6
2,607,899	+		Sama_2158	0.32	-0.5
2,607,910	+		Sama_2158	0.33	-0.5
2,607,910	+		Sama_2158	0.33	-0.3
2,607,927	+		Sama_2158	0.34	-0.9
2,608,007	+		Sama_2158	0.41	-1.6
2,608,007	+		Sama_2158	0.41	-0.8
2,608,007	+		Sama_2158	0.41	-0.6
2,608,025	+		Sama_2158	0.43	-0.2
2,608,066	+		Sama_2158	0.46	-1.2
2,608,066	+		Sama_2158	0.46	+0.1
2,608,067	-		Sama_2158	0.46	-0.3
2,608,123	+		Sama_2158	0.51	+0.0
2,608,123	+		Sama_2158	0.51	-0.3
2,608,124	-		Sama_2158	0.51	-0.6
2,608,124	-		Sama_2158	0.51	-0.6
2,608,134	+		Sama_2158	0.52	-2.1
2,608,134	+		Sama_2158	0.52	-0.3
2,608,135	-		Sama_2158	0.52	-1.3
2,608,193	+		Sama_2158	0.57	-0.4
2,608,193	+		Sama_2158	0.57	-0.0
2,608,193	+		Sama_2158	0.57	-0.4
2,608,194	-		Sama_2158	0.57	-1.8
2,608,194	-		Sama_2158	0.57	-0.6
2,608,194	-		Sama_2158	0.57	-2.1
2,608,194	-		Sama_2158	0.57	-0.5
2,608,249	+		Sama_2158	0.62	-1.3
2,608,250	-		Sama_2158	0.62	+1.0
2,608,250	-		Sama_2158	0.62	-1.2
2,608,250	-		Sama_2158	0.62	+0.7
2,608,250	-		Sama_2158	0.62	+0.1
2,608,250	-		Sama_2158	0.62	-0.1
2,608,250	-		Sama_2158	0.62	-0.6
2,608,250	-		Sama_2158	0.62	+0.7
2,608,256	+		Sama_2158	0.62	-1.3
2,608,256	+		Sama_2158	0.62	-1.3
2,608,256	+		Sama_2158	0.62	+0.6
2,608,303	-		Sama_2158	0.66	-1.9
2,608,325	-		Sama_2158	0.68	-1.1
2,608,366	-		Sama_2158	0.72	-0.3
2,608,366	-		Sama_2158	0.72	-1.1
2,608,367	+		Sama_2158	0.72	-0.1
2,608,367	+		Sama_2158	0.72	-0.1
2,608,368	-		Sama_2158	0.72	-1.8
2,608,368	-		Sama_2158	0.72	-0.3
2,608,368	-		Sama_2158	0.72	-1.0
2,608,392	-		Sama_2158	0.74	-0.0
2,608,392	-		Sama_2158	0.74	-0.3
2,608,392	-		Sama_2158	0.74	-0.2
2,608,424	+		Sama_2158	0.77	-0.8
2,608,424	+		Sama_2158	0.77	+0.5
2,608,424	+		Sama_2158	0.77	-0.2
2,608,425	-		Sama_2158	0.77	-0.8
2,608,425	-		Sama_2158	0.77	+0.9
2,608,425	-		Sama_2158	0.77	-1.5
2,608,428	+		Sama_2158	0.77	+0.2
2,608,428	+		Sama_2158	0.77	-0.8
2,608,429	-		Sama_2158	0.77	-0.9
2,608,429	-		Sama_2158	0.77	+0.5
2,608,492	+		Sama_2158	0.83	-0.3
2,608,506	+		Sama_2158	0.84	-1.3
2,608,599	-				+1.5
2,608,599	-				+0.0
2,608,657	+				+0.2
2,608,785	+				-0.8
2,609,226	-		Sama_2159	0.48	-0.3
2,609,471	-		Sama_2159	0.70	-2.1
2,609,476	+		Sama_2159	0.70	-1.3