Strain Fitness in Shewanella amazonensis SB2B around Sama_2140

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,583,991	+		Sama_2138	0.85	-0.6
2,584,007	+				+0.4
2,584,007	+				-2.2
2,584,008	-				+0.0
2,584,052	+				+0.8
2,584,119	-		Sama_2139	0.10	+0.6
2,584,188	+		Sama_2139	0.19	+1.2
2,584,188	+		Sama_2139	0.19	-0.2
2,584,189	-		Sama_2139	0.19	-0.1
2,584,197	+		Sama_2139	0.20	-2.4
2,584,197	+		Sama_2139	0.20	-2.1
2,584,198	-		Sama_2139	0.20	-1.1
2,584,416	-		Sama_2139	0.47	+0.3
2,584,423	-		Sama_2139	0.48	+1.2
2,584,455	+		Sama_2139	0.52	+0.4
2,584,455	+		Sama_2139	0.52	-1.4
2,584,455	+		Sama_2139	0.52	+0.5
2,584,456	-		Sama_2139	0.52	+0.2
2,584,490	+		Sama_2139	0.56	-1.1
2,584,519	+		Sama_2139	0.60	-1.8
2,584,519	+		Sama_2139	0.60	-1.4
2,584,519	+		Sama_2139	0.60	+0.2
2,584,519	+		Sama_2139	0.60	-2.3
2,584,519	+		Sama_2139	0.60	+0.2
2,584,520	-		Sama_2139	0.60	+1.5
2,584,520	-		Sama_2139	0.60	-0.8
2,584,520	-		Sama_2139	0.60	+1.0
2,584,661	+		Sama_2139	0.78	-0.0
2,584,665	+		Sama_2139	0.78	+0.3
2,584,665	+		Sama_2139	0.78	+0.2
2,584,665	+		Sama_2139	0.78	-0.6
2,584,665	+		Sama_2139	0.78	-1.1
2,584,666	-		Sama_2139	0.78	+1.2
2,584,666	-		Sama_2139	0.78	+1.9
2,584,666	-		Sama_2139	0.78	-0.5
2,584,689	-		Sama_2139	0.81	-1.0
2,584,779	+				-0.8
2,584,779	+				-0.9
2,584,779	+				-0.4
2,584,780	-				+0.3
2,584,780	-				-2.7
2,584,839	+				+0.4
2,584,839	+				+0.8
2,584,840	-				-1.4
2,584,948	-				-2.1
2,584,959	+				-1.1
2,584,960	-				-1.9
2,584,960	-				-1.5
2,584,985	+				+0.0
2,585,062	-				+0.2
2,585,062	-				-1.4
2,585,152	+		Sama_2140	0.12	+1.0
2,585,154	+		Sama_2140	0.12	-1.6
2,585,155	-		Sama_2140	0.12	+0.5
2,585,155	-		Sama_2140	0.12	+0.7
2,585,155	-		Sama_2140	0.12	+1.9
2,585,196	+		Sama_2140	0.15	-0.7
2,585,197	-		Sama_2140	0.15	-0.1
2,585,270	-		Sama_2140	0.20	-0.9
2,585,488	+		Sama_2140	0.36	+1.0
2,585,540	-		Sama_2140	0.39	-0.2
2,585,574	+		Sama_2140	0.42	-0.1
2,585,575	-		Sama_2140	0.42	-0.2
2,585,580	+		Sama_2140	0.42	-0.0
2,585,580	+		Sama_2140	0.42	+1.2
2,585,580	+		Sama_2140	0.42	+0.6
2,585,581	-		Sama_2140	0.42	-0.8
2,585,817	+		Sama_2140	0.58	+0.5
2,585,817	+		Sama_2140	0.58	+0.5
2,585,817	+		Sama_2140	0.58	-0.8
2,585,818	-		Sama_2140	0.59	-1.9
2,585,936	+		Sama_2140	0.67	+0.2
2,585,936	+		Sama_2140	0.67	-0.8
2,585,936	+		Sama_2140	0.67	+0.4
2,585,936	+		Sama_2140	0.67	+2.5
2,585,936	+		Sama_2140	0.67	+0.0
2,585,936	+		Sama_2140	0.67	+0.6
2,585,936	+		Sama_2140	0.67	+0.2
2,585,936	+		Sama_2140	0.67	-0.5
2,585,936	+		Sama_2140	0.67	+0.1
2,585,936	+		Sama_2140	0.67	+1.2
2,585,936	+		Sama_2140	0.67	-0.2
2,585,936	+		Sama_2140	0.67	-1.1
2,585,936	+		Sama_2140	0.67	+0.2
2,585,937	-		Sama_2140	0.67	+0.4
2,585,937	-		Sama_2140	0.67	+0.5
2,585,937	-		Sama_2140	0.67	+1.1
2,585,937	-		Sama_2140	0.67	-0.7
2,585,937	-		Sama_2140	0.67	-0.0
2,585,937	-		Sama_2140	0.67	+0.7
2,585,937	-		Sama_2140	0.67	+0.9
2,585,937	-		Sama_2140	0.67	-2.6
2,585,937	-		Sama_2140	0.67	+0.9
2,585,937	-		Sama_2140	0.67	-1.4
2,585,937	-		Sama_2140	0.67	-1.4
2,585,937	-		Sama_2140	0.67	-0.6
2,585,937	-		Sama_2140	0.67	+0.2
2,585,937	-		Sama_2140	0.67	-1.0
2,585,937	-		Sama_2140	0.67	+1.5
2,585,937	-		Sama_2140	0.67	-2.6
2,585,937	-		Sama_2140	0.67	+1.2
2,585,937	-		Sama_2140	0.67	-0.4
2,585,940	+		Sama_2140	0.67	+0.1
2,585,940	+		Sama_2140	0.67	-2.1
2,585,940	+		Sama_2140	0.67	-0.6
2,585,940	+		Sama_2140	0.67	-0.0
2,585,940	+		Sama_2140	0.67	+0.7
2,585,940	+		Sama_2140	0.67	-0.2
2,585,941	-		Sama_2140	0.67	-0.9
2,585,947	+		Sama_2140	0.68	+1.0
2,585,978	+		Sama_2140	0.70	+0.2
2,585,979	-		Sama_2140	0.70	+0.8
2,586,030	+		Sama_2140	0.73	+0.6
2,586,030	+		Sama_2140	0.73	+0.1
2,586,030	+		Sama_2140	0.73	+0.4
2,586,030	+		Sama_2140	0.73	-0.4
2,586,031	-		Sama_2140	0.73	+0.4
2,586,031	-		Sama_2140	0.73	+1.2
2,586,123	+		Sama_2140	0.80	-0.4
2,586,124	-		Sama_2140	0.80	+0.4
2,586,124	-		Sama_2140	0.80	+0.5
2,586,271	+				-0.8
2,586,271	+				+1.2
2,586,271	+				-0.6
2,586,272	-				-0.2
2,586,272	-				-1.6
2,586,272	-				-0.8
2,586,293	+				-0.6
2,586,361	-				-1.4
2,586,454	+				+2.8
2,586,454	+				+0.0
2,586,454	+				+0.8
2,586,454	+				-0.7
2,586,455	-				+0.1
2,586,455	-				+0.6
2,586,455	-				-1.2
2,586,455	-				-0.4
2,586,455	-				-0.3
2,586,458	+				+1.1
2,586,458	+				-1.6
2,586,459	-				+1.6
2,586,459	-				-1.6
2,586,459	-				+1.6
2,586,459	-				-0.3
2,586,459	-				-1.8
2,586,459	-				-0.7
2,586,460	+				-1.0
2,586,460	+				-1.3
2,586,460	+				+1.2
2,586,460	+				-0.8
2,586,460	+				+0.0
2,586,460	+				-0.6
2,586,460	+				+0.2
2,586,461	-				+1.1
2,586,461	-				+1.2
2,586,461	-				-0.5
2,586,461	-				-0.9
2,586,461	-				-0.4
2,586,461	-				+0.3
2,586,461	-				+0.2
2,586,496	-				+1.2
2,586,500	-				-0.4
2,586,559	+				-0.3
2,586,560	-				+1.4
2,586,560	-				-0.1
2,586,595	+		Sama_2141	0.13	-0.8
2,586,631	-		Sama_2141	0.21	-0.1
2,586,651	+		Sama_2141	0.25	-0.7
2,586,651	+		Sama_2141	0.25	+0.5
2,586,652	-		Sama_2141	0.25	+1.3
2,586,652	-		Sama_2141	0.25	+0.3
2,586,652	-		Sama_2141	0.25	-2.1
2,586,652	-		Sama_2141	0.25	+1.3
2,586,652	-		Sama_2141	0.25	-0.8
2,586,710	+		Sama_2141	0.38	-1.6
2,586,711	-		Sama_2141	0.38	-0.1
2,586,728	+		Sama_2141	0.42	+0.7
2,586,728	+		Sama_2141	0.42	+1.9
2,586,729	-		Sama_2141	0.42	+0.0
2,586,742	-		Sama_2141	0.45	-0.2
2,586,742	-		Sama_2141	0.45	+0.0
2,586,800	+		Sama_2141	0.57	+0.3
2,586,949	-		Sama_2141	0.89	-2.3
2,586,999	-				+0.3
2,586,999	-				+2.2
2,586,999	-				+0.4
2,586,999	-				-0.0
2,586,999	-				+0.2
2,587,023	+				-0.1
2,587,023	+				+0.9
2,587,023	+				-0.6
2,587,023	+				-0.5
2,587,024	-				-0.2
2,587,031	+				-1.3
2,587,037	+				+0.1
2,587,038	-				-0.3
2,587,086	+				+0.1
2,587,099	-				-0.1
2,587,100	+				-0.7
2,587,100	+				-0.8
2,587,101	-				-0.8
2,587,175	+				-0.8
2,587,213	+				-1.1
2,587,309	+		Sama_2142	0.12	+0.6
2,587,310	-		Sama_2142	0.13	-0.6
2,587,324	+		Sama_2142	0.15	+0.9
2,587,345	+		Sama_2142	0.18	-0.1
2,587,346	-		Sama_2142	0.18	+1.7
2,587,346	-		Sama_2142	0.18	+3.0
2,587,346	-		Sama_2142	0.18	+0.2