Strain Fitness in Shewanella amazonensis SB2B around Sama_2121

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,566,011	+		Sama_2120	0.72	-0.0
2,566,012	-		Sama_2120	0.72	+0.1
2,566,092	+		Sama_2120	0.75	-2.0
2,566,092	+		Sama_2120	0.75	+0.7
2,566,152	+		Sama_2120	0.78	-0.6
2,566,158	+		Sama_2120	0.78	-1.4
2,566,159	-		Sama_2120	0.78	+0.9
2,566,184	+		Sama_2120	0.79	-0.1
2,566,225	+		Sama_2120	0.80	+0.8
2,566,261	+		Sama_2120	0.82	-2.6
2,566,261	+		Sama_2120	0.82	+0.5
2,566,262	-		Sama_2120	0.82	+0.8
2,566,262	-		Sama_2120	0.82	-0.2
2,566,271	+		Sama_2120	0.82	+1.2
2,566,275	+		Sama_2120	0.83	+0.2
2,566,288	+		Sama_2120	0.83	+1.1
2,566,288	+		Sama_2120	0.83	-0.9
2,566,481	-				+0.0
2,566,481	-				-0.8
2,566,481	-				-1.2
2,566,481	-				+1.2
2,566,481	-				+0.2
2,566,482	+				-0.4
2,566,559	+				-0.8
2,566,616	-				+0.1
2,566,619	-				-1.4
2,566,639	+				+1.7
2,566,640	-				-2.0
2,566,686	-				+0.1
2,566,732	-				+1.2
2,566,732	-				-1.7
2,566,767	-				-2.2
2,566,794	+				+0.1
2,566,797	+				-0.1
2,566,797	+				+0.2
2,566,797	+				+0.6
2,566,797	+				+1.2
2,566,808	-				-1.8
2,566,911	+				-0.0
2,566,981	-				-3.0
2,567,067	+		Sama_2121	0.13	-3.6
2,567,067	+		Sama_2121	0.13	-1.4
2,567,183	+		Sama_2121	0.29	-2.6
2,567,195	+		Sama_2121	0.30	-1.8
2,567,225	+		Sama_2121	0.34	-0.8
2,567,226	-		Sama_2121	0.35	-1.8
2,567,226	-		Sama_2121	0.35	-1.4
2,567,308	+		Sama_2121	0.46	-2.2
2,567,308	+		Sama_2121	0.46	-1.8
2,567,309	-		Sama_2121	0.46	-1.4
2,567,309	-		Sama_2121	0.46	+0.6
2,567,415	-		Sama_2121	0.60	-1.6
2,567,415	-		Sama_2121	0.60	-2.2
2,567,466	+		Sama_2121	0.67	-0.4
2,567,646	+				-2.0
2,567,646	+				-1.1
2,567,646	+				+0.2
2,567,646	+				-0.6
2,567,646	+				-2.1
2,567,647	-				-0.2
2,567,647	-				-2.1
2,567,647	-				-1.1
2,567,647	-				-0.4
2,567,652	+				-1.4
2,567,653	-				-0.4
2,567,653	-				-1.8
2,567,706	+				-0.1
2,567,706	+				-1.2
2,567,706	+				-0.1
2,567,706	+				-0.5
2,567,706	+				+1.6
2,567,706	+				-1.8
2,567,706	+				-1.8
2,567,707	-				-0.9
2,567,747	-				+2.0
2,567,750	+				-0.0
2,567,750	+				-1.1
2,567,750	+				-1.0
2,567,750	+				+0.6
2,567,751	-				+0.5
2,567,764	+				-0.2
2,567,783	+				+1.7
2,567,783	+				-0.6
2,567,783	+				-0.8
2,567,801	+				-0.2
2,567,802	-				-1.1
2,567,802	-				+0.5
2,567,866	+				-0.8
2,567,867	-				-2.7
2,567,877	+		Sama_2122	0.10	-1.8
2,567,933	+		Sama_2122	0.16	-1.0
2,567,933	+		Sama_2122	0.16	-1.0
2,567,937	+		Sama_2122	0.17	-0.6
2,567,937	+		Sama_2122	0.17	-0.6
2,567,938	-		Sama_2122	0.17	+0.4
2,567,951	+		Sama_2122	0.18	+0.8
2,567,976	+		Sama_2122	0.21	+0.4
2,568,059	-		Sama_2122	0.30	+0.4
2,568,099	+		Sama_2122	0.35	-1.8
2,568,099	+		Sama_2122	0.35	-0.6
2,568,100	-		Sama_2122	0.35	-0.6
2,568,101	+		Sama_2122	0.35	+0.1
2,568,101	+		Sama_2122	0.35	-0.3
2,568,102	-		Sama_2122	0.35	-1.0
2,568,102	-		Sama_2122	0.35	+0.5
2,568,102	-		Sama_2122	0.35	-0.3
2,568,102	-		Sama_2122	0.35	-1.1
2,568,112	+		Sama_2122	0.36	-0.3
2,568,127	+		Sama_2122	0.38	-0.0
2,568,282	-		Sama_2122	0.55	-1.3
2,568,358	-		Sama_2122	0.63	-0.6
2,568,387	+		Sama_2122	0.66	-0.8
2,568,465	-		Sama_2122	0.75	-0.7
2,568,465	-		Sama_2122	0.75	-0.3
2,568,465	-		Sama_2122	0.75	-1.4
2,568,495	-		Sama_2122	0.78	+0.6
2,568,527	+		Sama_2122	0.81	+0.6
2,568,527	+		Sama_2122	0.81	+1.8
2,568,528	-		Sama_2122	0.82	+0.5
2,568,528	-		Sama_2122	0.82	-0.8
2,568,528	-		Sama_2122	0.82	+0.2
2,568,531	+		Sama_2122	0.82	-1.4
2,568,532	-		Sama_2122	0.82	+1.5
2,568,579	+		Sama_2122	0.87	-0.9
2,568,579	+		Sama_2122	0.87	-0.1
2,568,579	+		Sama_2122	0.87	+0.1
2,568,580	-		Sama_2122	0.87	+0.0
2,568,580	-		Sama_2122	0.87	+0.6
2,568,581	+		Sama_2122	0.87	+1.8
2,568,582	-		Sama_2122	0.88	-1.6
2,568,600	+		Sama_2122	0.89	+1.9
2,568,601	-		Sama_2122	0.90	-0.8
2,568,635	+				-0.8
2,568,635	+				-0.5
2,568,635	+				-0.1
2,568,635	+				+0.2
2,568,636	-				-0.1
2,568,678	-				-2.0
2,568,696	+				+0.7
2,568,697	-				-0.7
2,568,697	-				+0.7
2,568,697	-				+0.2
2,568,698	+				+0.7