Strain Fitness in Shewanella amazonensis SB2B around Sama_2063

Experiment: Paraquat dichloride 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmnmA and Sama_2063 are separated by 3 nucleotidesSama_2063 and Sama_2064 are separated by 33 nucleotides Sama_2062: mnmA - tRNA-specific 2-thiouridylase MnmA (RefSeq), at 2,497,940 to 2,499,073 mnmA Sama_2063: Sama_2063 - hypothetical protein (RefSeq), at 2,499,077 to 2,499,691 _2063 Sama_2064: Sama_2064 - adenylosuccinate lyase (RefSeq), at 2,499,725 to 2,501,095 _2064 Position (kb) 2499 2500Strain fitness (log2 ratio) -3 -2 -1 0 1at 2499.063 kb on + strandat 2499.143 kb on + strand, within Sama_2063at 2499.143 kb on + strand, within Sama_2063at 2499.143 kb on + strand, within Sama_2063at 2499.143 kb on + strand, within Sama_2063at 2499.143 kb on + strand, within Sama_2063at 2499.143 kb on + strand, within Sama_2063at 2499.143 kb on + strand, within Sama_2063at 2499.143 kb on + strand, within Sama_2063at 2499.202 kb on + strand, within Sama_2063at 2499.202 kb on + strand, within Sama_2063at 2499.202 kb on + strand, within Sama_2063at 2499.236 kb on + strand, within Sama_2063at 2499.236 kb on + strand, within Sama_2063at 2499.326 kb on + strand, within Sama_2063at 2499.370 kb on + strand, within Sama_2063at 2499.472 kb on + strand, within Sama_2063at 2499.472 kb on + strand, within Sama_2063at 2499.484 kb on + strand, within Sama_2063at 2499.552 kb on + strand, within Sama_2063at 2499.687 kb on + strandat 2499.689 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml
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2,499,063 + +0.6
2,499,143 + Sama_2063 0.11 -2.8
2,499,143 + Sama_2063 0.11 -2.3
2,499,143 + Sama_2063 0.11 -1.8
2,499,143 + Sama_2063 0.11 -2.7
2,499,143 + Sama_2063 0.11 -1.3
2,499,143 + Sama_2063 0.11 -3.4
2,499,143 + Sama_2063 0.11 -2.8
2,499,143 + Sama_2063 0.11 -2.3
2,499,202 + Sama_2063 0.20 -3.5
2,499,202 + Sama_2063 0.20 -2.3
2,499,202 + Sama_2063 0.20 -2.4
2,499,236 + Sama_2063 0.26 -2.4
2,499,236 + Sama_2063 0.26 -1.1
2,499,326 + Sama_2063 0.40 -0.7
2,499,370 + Sama_2063 0.48 -3.0
2,499,472 + Sama_2063 0.64 -2.3
2,499,472 + Sama_2063 0.64 -0.6
2,499,484 + Sama_2063 0.66 -2.9
2,499,552 + Sama_2063 0.77 -0.4
2,499,687 + -2.3
2,499,689 + -1.8

Or see this region's nucleotide sequence