Strain Fitness in Shewanella amazonensis SB2B around Sama_2049

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,483,950	-		Sama_2048	0.26	-1.8
2,483,950	-		Sama_2048	0.26	-3.2
2,483,976	-		Sama_2048	0.29	-1.6
2,484,018	-		Sama_2048	0.32	-2.4
2,484,084	-		Sama_2048	0.38	-3.4
2,484,084	-		Sama_2048	0.38	-3.3
2,484,084	-		Sama_2048	0.38	-1.1
2,484,291	-		Sama_2048	0.57	-2.1
2,484,331	+		Sama_2048	0.60	-2.4
2,484,331	+		Sama_2048	0.60	-3.9
2,484,331	+		Sama_2048	0.60	-0.8
2,484,332	-		Sama_2048	0.61	-0.8
2,484,332	-		Sama_2048	0.61	-3.0
2,484,332	-		Sama_2048	0.61	-2.3
2,484,480	-		Sama_2048	0.74	-1.1
2,484,571	-		Sama_2048	0.82	-1.5
2,484,571	-		Sama_2048	0.82	-2.5
2,484,571	-		Sama_2048	0.82	-3.9
2,484,583	+		Sama_2048	0.83	-4.3
2,484,584	-		Sama_2048	0.83	-2.0
2,484,584	-		Sama_2048	0.83	-1.4
2,484,608	-		Sama_2048	0.85	-3.0
2,484,718	-				-3.5
2,484,718	-				-1.6
2,484,765	+				-0.8
2,484,766	-				-3.8
2,484,766	-				-1.6
2,484,776	-				-0.4
2,484,776	-				-2.7
2,484,779	-				-2.5
2,484,779	-				-3.7
2,484,779	-				-3.0
2,484,779	-				-2.5
2,484,779	-				-2.4
2,484,807	+				-1.5
2,484,807	+				-0.8
2,484,808	-				-1.4
2,484,808	-				+1.3
2,484,808	-				+0.1
2,484,808	-				-0.8
2,484,808	-				-0.8
2,484,889	+				+1.3
2,484,889	+				+0.9
2,484,889	+				+1.4
2,484,893	+				-0.6
2,486,627	+	metG	Sama_2049	0.84	+0.7
2,486,628	-	metG	Sama_2049	0.84	+0.1
2,486,646	+	metG	Sama_2049	0.84	+1.6
2,486,755	+	metG	Sama_2049	0.90	+1.9
2,486,755	+	metG	Sama_2049	0.90	+0.9
2,486,788	-				-1.8
2,486,788	-				-2.1
2,486,788	-				+0.6
2,486,831	+				-0.6
2,486,958	+				+0.2
2,486,959	-				-2.0
2,487,005	-				+0.0
2,487,005	-				+1.2
2,487,007	-				+0.6
2,487,043	-				-0.2
2,487,106	+		Sama_2050	0.10	+0.2
2,487,106	+		Sama_2050	0.10	+0.5
2,487,107	-		Sama_2050	0.10	-0.2
2,487,107	-		Sama_2050	0.10	-1.1
2,487,107	-		Sama_2050	0.10	+0.3
2,487,107	-		Sama_2050	0.10	+0.2
2,487,108	+		Sama_2050	0.10	+0.5
2,487,109	-		Sama_2050	0.10	+0.5
2,487,109	-		Sama_2050	0.10	-1.6
2,487,109	-		Sama_2050	0.10	-0.4
2,487,109	-		Sama_2050	0.10	-0.4
2,487,113	+		Sama_2050	0.11	+0.4
2,487,147	-		Sama_2050	0.15	-0.9
2,487,205	-		Sama_2050	0.23	-1.3
2,487,241	-		Sama_2050	0.28	-0.6
2,487,243	-		Sama_2050	0.28	-1.1
2,487,243	-		Sama_2050	0.28	-1.1
2,487,243	-		Sama_2050	0.28	-0.8
2,487,243	-		Sama_2050	0.28	-0.2
2,487,243	-		Sama_2050	0.28	+0.3
2,487,243	-		Sama_2050	0.28	-0.6
2,487,281	-		Sama_2050	0.33	-1.4
2,487,289	-		Sama_2050	0.34	-1.6
2,487,289	-		Sama_2050	0.34	+0.8
2,487,323	-		Sama_2050	0.39	-0.7
2,487,367	-		Sama_2050	0.45	-0.4
2,487,388	+		Sama_2050	0.48	+0.1
2,487,389	-		Sama_2050	0.48	-0.1
2,487,457	-		Sama_2050	0.57	+0.2
2,487,457	-		Sama_2050	0.57	-2.8
2,487,457	-		Sama_2050	0.57	+2.0
2,487,510	+		Sama_2050	0.64	+0.3
2,487,511	-		Sama_2050	0.64	-0.5
2,487,511	-		Sama_2050	0.64	+0.2
2,487,511	-		Sama_2050	0.64	-1.4
2,487,560	-		Sama_2050	0.71	+0.5
2,487,560	-		Sama_2050	0.71	+0.5
2,487,560	-		Sama_2050	0.71	-2.3
2,487,560	-		Sama_2050	0.71	-0.3
2,487,560	-		Sama_2050	0.71	-2.7
2,487,560	-		Sama_2050	0.71	-0.1
2,487,560	-		Sama_2050	0.71	+0.2
2,487,623	-		Sama_2050	0.79	+0.6
2,487,623	-		Sama_2050	0.79	-0.4
2,487,623	-		Sama_2050	0.79	+0.1
2,487,667	+		Sama_2050	0.85	-0.4
2,487,668	-		Sama_2050	0.85	-0.8
2,487,668	-		Sama_2050	0.85	-1.0
2,487,668	-		Sama_2050	0.85	-0.5
2,487,695	-		Sama_2050	0.89	-0.2
2,487,695	-		Sama_2050	0.89	-0.8
2,487,723	+				-1.6
2,487,756	-				-0.2
2,487,797	+				-2.9
2,487,798	-				+0.1
2,487,798	-				-0.5
2,487,798	-				+0.2
2,487,798	-				-1.1
2,487,798	-				-0.0
2,487,802	-				-3.0
2,487,817	-				+0.2
2,487,829	+				+0.6
2,487,830	-				-1.6
2,487,913	+				-1.0
2,487,913	+				-1.7
2,487,916	+				+1.3
2,487,916	+				-2.1
2,487,917	-				-1.4
2,487,917	-				-0.7
2,487,941	+				+0.2
2,487,942	-				-0.6
2,487,942	-				-0.2
2,487,956	+				+1.2
2,487,958	+				-0.6
2,487,958	+				+1.0
2,487,958	+				-1.1
2,487,959	-				-1.1
2,487,959	-				+1.9