Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2016 and Sama_2017 are separated by 185 nucleotides Sama_2017 and Sama_2018 are separated by 383 nucleotides
Sama_2016: Sama_2016 - GntR family transcriptional regulator (RefSeq), at 2,450,269 to 2,451,612
_2016
Sama_2017: Sama_2017 - bicyclomycin resistance protein (RefSeq), at 2,451,798 to 2,453,003
_2017
Sama_2018: Sama_2018 - acetolactate synthase 3 catalytic subunit (RefSeq), at 2,453,387 to 2,455,108
_2018
Position (kb)
2451
2452
2453
2454 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2450.804 kb on + strand, within Sama_2016 at 2450.804 kb on + strand, within Sama_2016 at 2450.804 kb on + strand, within Sama_2016 at 2450.804 kb on + strand, within Sama_2016 at 2450.805 kb on - strand, within Sama_2016 at 2450.805 kb on - strand, within Sama_2016 at 2450.821 kb on + strand, within Sama_2016 at 2450.895 kb on + strand, within Sama_2016 at 2450.895 kb on + strand, within Sama_2016 at 2450.926 kb on - strand, within Sama_2016 at 2450.947 kb on + strand, within Sama_2016 at 2450.947 kb on + strand, within Sama_2016 at 2450.948 kb on - strand, within Sama_2016 at 2451.045 kb on + strand, within Sama_2016 at 2451.064 kb on + strand, within Sama_2016 at 2451.064 kb on + strand, within Sama_2016 at 2451.130 kb on + strand, within Sama_2016 at 2451.130 kb on + strand, within Sama_2016 at 2451.130 kb on + strand, within Sama_2016 at 2451.130 kb on + strand, within Sama_2016 at 2451.180 kb on + strand, within Sama_2016 at 2451.180 kb on + strand, within Sama_2016 at 2451.180 kb on + strand, within Sama_2016 at 2451.224 kb on + strand, within Sama_2016 at 2451.224 kb on + strand, within Sama_2016 at 2451.224 kb on + strand, within Sama_2016 at 2451.224 kb on + strand, within Sama_2016 at 2451.224 kb on + strand, within Sama_2016 at 2451.224 kb on + strand, within Sama_2016 at 2451.224 kb on + strand, within Sama_2016 at 2451.224 kb on + strand, within Sama_2016 at 2451.225 kb on - strand, within Sama_2016 at 2451.225 kb on - strand, within Sama_2016 at 2451.225 kb on - strand, within Sama_2016 at 2451.434 kb on + strand, within Sama_2016 at 2451.434 kb on + strand, within Sama_2016 at 2451.434 kb on + strand, within Sama_2016 at 2451.434 kb on + strand, within Sama_2016 at 2451.434 kb on + strand, within Sama_2016 at 2451.434 kb on + strand, within Sama_2016 at 2451.435 kb on - strand, within Sama_2016 at 2451.435 kb on - strand, within Sama_2016 at 2451.461 kb on + strand, within Sama_2016 at 2451.461 kb on + strand, within Sama_2016 at 2451.525 kb on + strand at 2451.526 kb on - strand at 2451.526 kb on - strand at 2451.551 kb on + strand at 2451.563 kb on + strand at 2451.563 kb on + strand at 2451.611 kb on - strand at 2451.611 kb on - strand at 2451.611 kb on - strand at 2451.616 kb on + strand at 2451.616 kb on + strand at 2451.617 kb on - strand at 2451.714 kb on + strand at 2451.715 kb on - strand at 2451.754 kb on + strand at 2451.754 kb on + strand at 2451.755 kb on - strand at 2451.755 kb on - strand at 2451.771 kb on + strand at 2451.793 kb on + strand at 2451.794 kb on - strand at 2451.794 kb on - strand at 2451.853 kb on + strand at 2451.885 kb on - strand at 2451.885 kb on - strand at 2451.902 kb on + strand at 2451.902 kb on + strand at 2451.903 kb on - strand at 2451.903 kb on - strand at 2451.903 kb on - strand at 2451.903 kb on - strand at 2451.906 kb on + strand at 2451.906 kb on + strand at 2451.906 kb on + strand at 2451.907 kb on - strand at 2451.907 kb on - strand at 2451.907 kb on - strand at 2451.907 kb on - strand at 2451.907 kb on - strand at 2451.981 kb on + strand, within Sama_2017 at 2451.981 kb on + strand, within Sama_2017 at 2451.982 kb on - strand, within Sama_2017 at 2451.982 kb on - strand, within Sama_2017 at 2451.982 kb on - strand, within Sama_2017 at 2452.153 kb on + strand, within Sama_2017 at 2452.211 kb on + strand, within Sama_2017 at 2452.230 kb on + strand, within Sama_2017 at 2452.230 kb on + strand, within Sama_2017 at 2452.230 kb on + strand, within Sama_2017 at 2452.230 kb on + strand, within Sama_2017 at 2452.230 kb on + strand, within Sama_2017 at 2452.230 kb on + strand, within Sama_2017 at 2452.230 kb on + strand, within Sama_2017 at 2452.231 kb on - strand, within Sama_2017 at 2452.231 kb on - strand, within Sama_2017 at 2452.231 kb on - strand, within Sama_2017 at 2452.241 kb on + strand, within Sama_2017 at 2452.241 kb on + strand, within Sama_2017 at 2452.242 kb on - strand, within Sama_2017 at 2452.242 kb on - strand, within Sama_2017 at 2452.242 kb on - strand, within Sama_2017 at 2452.242 kb on - strand, within Sama_2017 at 2452.244 kb on + strand, within Sama_2017 at 2452.245 kb on - strand, within Sama_2017 at 2452.245 kb on - strand, within Sama_2017 at 2452.286 kb on + strand, within Sama_2017 at 2452.320 kb on + strand, within Sama_2017 at 2452.321 kb on - strand, within Sama_2017 at 2452.336 kb on - strand, within Sama_2017 at 2452.360 kb on + strand, within Sama_2017 at 2452.361 kb on - strand, within Sama_2017 at 2452.361 kb on - strand, within Sama_2017 at 2452.363 kb on - strand, within Sama_2017 at 2452.372 kb on + strand, within Sama_2017 at 2452.438 kb on + strand, within Sama_2017 at 2452.480 kb on + strand, within Sama_2017 at 2452.532 kb on + strand, within Sama_2017 at 2452.533 kb on - strand, within Sama_2017 at 2452.542 kb on + strand, within Sama_2017 at 2452.542 kb on + strand, within Sama_2017 at 2452.610 kb on + strand, within Sama_2017 at 2452.658 kb on + strand, within Sama_2017 at 2452.658 kb on + strand, within Sama_2017 at 2452.658 kb on + strand, within Sama_2017 at 2452.659 kb on - strand, within Sama_2017 at 2452.709 kb on + strand, within Sama_2017 at 2452.731 kb on + strand, within Sama_2017 at 2452.732 kb on - strand, within Sama_2017 at 2452.736 kb on + strand, within Sama_2017 at 2452.736 kb on + strand, within Sama_2017 at 2452.736 kb on + strand, within Sama_2017 at 2452.736 kb on + strand, within Sama_2017 at 2452.737 kb on - strand, within Sama_2017 at 2452.779 kb on - strand, within Sama_2017 at 2452.799 kb on + strand, within Sama_2017 at 2452.800 kb on - strand, within Sama_2017 at 2452.849 kb on + strand, within Sama_2017 at 2452.850 kb on - strand, within Sama_2017 at 2452.905 kb on + strand at 2452.906 kb on - strand at 2453.002 kb on - strand at 2453.155 kb on - strand at 2453.155 kb on - strand at 2453.341 kb on + strand at 2453.341 kb on + strand at 2453.341 kb on + strand at 2453.341 kb on + strand at 2453.342 kb on - strand at 2453.348 kb on + strand at 2453.348 kb on + strand at 2453.348 kb on + strand at 2453.349 kb on - strand at 2453.349 kb on - strand at 2453.360 kb on + strand at 2453.360 kb on + strand at 2453.442 kb on + strand at 2453.442 kb on + strand at 2453.486 kb on + strand at 2453.486 kb on + strand at 2453.487 kb on - strand at 2453.487 kb on - strand at 2453.512 kb on + strand at 2453.512 kb on + strand at 2453.512 kb on + strand at 2453.512 kb on + strand at 2453.514 kb on + strand at 2453.595 kb on + strand, within Sama_2018 at 2453.596 kb on - strand, within Sama_2018 at 2453.599 kb on - strand, within Sama_2018 at 2453.654 kb on + strand, within Sama_2018 at 2453.654 kb on + strand, within Sama_2018 at 2453.654 kb on + strand, within Sama_2018 at 2453.654 kb on + strand, within Sama_2018 at 2453.825 kb on + strand, within Sama_2018 at 2453.825 kb on + strand, within Sama_2018 at 2453.825 kb on + strand, within Sama_2018 at 2453.826 kb on - strand, within Sama_2018 at 2453.906 kb on + strand, within Sama_2018 at 2453.906 kb on + strand, within Sama_2018 at 2453.906 kb on + strand, within Sama_2018 at 2453.939 kb on + strand, within Sama_2018 at 2453.939 kb on + strand, within Sama_2018 at 2453.939 kb on + strand, within Sama_2018 at 2453.939 kb on + strand, within Sama_2018 at 2453.940 kb on - strand, within Sama_2018 at 2453.940 kb on - strand, within Sama_2018 at 2453.940 kb on - strand, within Sama_2018 at 2453.940 kb on - strand, within Sama_2018
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 2,450,804 + Sama_2016 0.40 -0.2 2,450,804 + Sama_2016 0.40 -0.1 2,450,804 + Sama_2016 0.40 +0.5 2,450,804 + Sama_2016 0.40 -0.1 2,450,805 - Sama_2016 0.40 -2.1 2,450,805 - Sama_2016 0.40 +0.3 2,450,821 + Sama_2016 0.41 +1.2 2,450,895 + Sama_2016 0.47 -0.3 2,450,895 + Sama_2016 0.47 +0.3 2,450,926 - Sama_2016 0.49 -1.6 2,450,947 + Sama_2016 0.50 +0.2 2,450,947 + Sama_2016 0.50 +0.5 2,450,948 - Sama_2016 0.51 +0.5 2,451,045 + Sama_2016 0.58 +1.9 2,451,064 + Sama_2016 0.59 +0.4 2,451,064 + Sama_2016 0.59 +1.5 2,451,130 + Sama_2016 0.64 +0.3 2,451,130 + Sama_2016 0.64 -0.8 2,451,130 + Sama_2016 0.64 +1.0 2,451,130 + Sama_2016 0.64 +0.6 2,451,180 + Sama_2016 0.68 +2.0 2,451,180 + Sama_2016 0.68 -2.5 2,451,180 + Sama_2016 0.68 +0.7 2,451,224 + Sama_2016 0.71 -0.0 2,451,224 + Sama_2016 0.71 -0.1 2,451,224 + Sama_2016 0.71 +1.2 2,451,224 + Sama_2016 0.71 +1.3 2,451,224 + Sama_2016 0.71 +0.7 2,451,224 + Sama_2016 0.71 -0.8 2,451,224 + Sama_2016 0.71 -0.0 2,451,224 + Sama_2016 0.71 +0.2 2,451,225 - Sama_2016 0.71 -1.0 2,451,225 - Sama_2016 0.71 +0.3 2,451,225 - Sama_2016 0.71 -0.6 2,451,434 + Sama_2016 0.87 +0.8 2,451,434 + Sama_2016 0.87 +0.0 2,451,434 + Sama_2016 0.87 +1.2 2,451,434 + Sama_2016 0.87 +0.8 2,451,434 + Sama_2016 0.87 +2.0 2,451,434 + Sama_2016 0.87 +1.4 2,451,435 - Sama_2016 0.87 -1.6 2,451,435 - Sama_2016 0.87 -0.7 2,451,461 + Sama_2016 0.89 +1.6 2,451,461 + Sama_2016 0.89 +1.6 2,451,525 + -0.6 2,451,526 - +0.6 2,451,526 - -0.4 2,451,551 + +1.4 2,451,563 + +1.5 2,451,563 + +0.9 2,451,611 - -0.6 2,451,611 - -1.1 2,451,611 - -1.7 2,451,616 + +0.6 2,451,616 + +1.0 2,451,617 - +0.0 2,451,714 + -0.1 2,451,715 - -1.5 2,451,754 + +2.5 2,451,754 + +0.9 2,451,755 - -0.4 2,451,755 - -1.3 2,451,771 + -0.1 2,451,793 + -0.4 2,451,794 - -1.4 2,451,794 - -0.6 2,451,853 + -2.3 2,451,885 - -1.1 2,451,885 - -2.8 2,451,902 + -2.6 2,451,902 + -0.2 2,451,903 - +1.2 2,451,903 - -1.8 2,451,903 - -0.6 2,451,903 - -1.8 2,451,906 + -0.6 2,451,906 + -0.1 2,451,906 + -1.0 2,451,907 - -0.6 2,451,907 - +1.0 2,451,907 - -0.9 2,451,907 - -1.1 2,451,907 - -1.4 2,451,981 + Sama_2017 0.15 -1.8 2,451,981 + Sama_2017 0.15 -3.0 2,451,982 - Sama_2017 0.15 -0.5 2,451,982 - Sama_2017 0.15 -1.3 2,451,982 - Sama_2017 0.15 -0.3 2,452,153 + Sama_2017 0.29 -2.7 2,452,211 + Sama_2017 0.34 -1.6 2,452,230 + Sama_2017 0.36 -1.1 2,452,230 + Sama_2017 0.36 +1.2 2,452,230 + Sama_2017 0.36 +1.0 2,452,230 + Sama_2017 0.36 +2.5 2,452,230 + Sama_2017 0.36 +1.0 2,452,230 + Sama_2017 0.36 +1.2 2,452,230 + Sama_2017 0.36 -1.1 2,452,231 - Sama_2017 0.36 -1.6 2,452,231 - Sama_2017 0.36 -1.5 2,452,231 - Sama_2017 0.36 -1.1 2,452,241 + Sama_2017 0.37 -0.5 2,452,241 + Sama_2017 0.37 -0.4 2,452,242 - Sama_2017 0.37 +0.0 2,452,242 - Sama_2017 0.37 -1.0 2,452,242 - Sama_2017 0.37 -0.7 2,452,242 - Sama_2017 0.37 -1.6 2,452,244 + Sama_2017 0.37 -2.8 2,452,245 - Sama_2017 0.37 -1.3 2,452,245 - Sama_2017 0.37 -1.1 2,452,286 + Sama_2017 0.40 -0.9 2,452,320 + Sama_2017 0.43 -0.7 2,452,321 - Sama_2017 0.43 -1.4 2,452,336 - Sama_2017 0.45 -2.4 2,452,360 + Sama_2017 0.47 +0.1 2,452,361 - Sama_2017 0.47 +0.2 2,452,361 - Sama_2017 0.47 -1.5 2,452,363 - Sama_2017 0.47 -0.8 2,452,372 + Sama_2017 0.48 +0.0 2,452,438 + Sama_2017 0.53 -0.6 2,452,480 + Sama_2017 0.57 -1.0 2,452,532 + Sama_2017 0.61 -0.8 2,452,533 - Sama_2017 0.61 -1.3 2,452,542 + Sama_2017 0.62 -0.8 2,452,542 + Sama_2017 0.62 -1.0 2,452,610 + Sama_2017 0.67 -0.7 2,452,658 + Sama_2017 0.71 +1.2 2,452,658 + Sama_2017 0.71 -0.8 2,452,658 + Sama_2017 0.71 -0.3 2,452,659 - Sama_2017 0.71 -1.4 2,452,709 + Sama_2017 0.76 -1.7 2,452,731 + Sama_2017 0.77 -0.4 2,452,732 - Sama_2017 0.77 -1.6 2,452,736 + Sama_2017 0.78 -0.5 2,452,736 + Sama_2017 0.78 -0.4 2,452,736 + Sama_2017 0.78 -1.1 2,452,736 + Sama_2017 0.78 -1.5 2,452,737 - Sama_2017 0.78 -0.8 2,452,779 - Sama_2017 0.81 +0.2 2,452,799 + Sama_2017 0.83 -0.1 2,452,800 - Sama_2017 0.83 -0.8 2,452,849 + Sama_2017 0.87 -1.2 2,452,850 - Sama_2017 0.87 +1.2 2,452,905 + -1.4 2,452,906 - -1.7 2,453,002 - +1.0 2,453,155 - -0.1 2,453,155 - +0.3 2,453,341 + -0.2 2,453,341 + -0.2 2,453,341 + -2.7 2,453,341 + +0.6 2,453,342 - -2.0 2,453,348 + +0.5 2,453,348 + -0.1 2,453,348 + -0.8 2,453,349 - -1.1 2,453,349 - +0.5 2,453,360 + +0.1 2,453,360 + +0.0 2,453,442 + -1.8 2,453,442 + +0.2 2,453,486 + -1.7 2,453,486 + -0.8 2,453,487 - -0.7 2,453,487 - +0.7 2,453,512 + -2.4 2,453,512 + +0.6 2,453,512 + +0.0 2,453,512 + +0.8 2,453,514 + -0.4 2,453,595 + Sama_2018 0.12 +0.2 2,453,596 - Sama_2018 0.12 -0.4 2,453,599 - Sama_2018 0.12 +1.1 2,453,654 + Sama_2018 0.16 -0.0 2,453,654 + Sama_2018 0.16 -1.4 2,453,654 + Sama_2018 0.16 +0.1 2,453,654 + Sama_2018 0.16 +0.2 2,453,825 + Sama_2018 0.25 +0.7 2,453,825 + Sama_2018 0.25 -1.6 2,453,825 + Sama_2018 0.25 -0.4 2,453,826 - Sama_2018 0.25 -0.3 2,453,906 + Sama_2018 0.30 +0.3 2,453,906 + Sama_2018 0.30 -0.7 2,453,906 + Sama_2018 0.30 +0.4 2,453,939 + Sama_2018 0.32 +0.6 2,453,939 + Sama_2018 0.32 +0.2 2,453,939 + Sama_2018 0.32 -1.8 2,453,939 + Sama_2018 0.32 -0.4 2,453,940 - Sama_2018 0.32 +0.9 2,453,940 - Sama_2018 0.32 -0.1 2,453,940 - Sama_2018 0.32 -1.1 2,453,940 - Sama_2018 0.32 +0.2
Or see this region's nucleotide sequence