Strain Fitness in Shewanella amazonensis SB2B around Sama_1978

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,405,905	+		Sama_1976	0.87	+0.8
2,405,906	-		Sama_1976	0.88	-0.3
2,405,938	-		Sama_1976	0.90	-2.5
2,405,980	+				-0.2
2,406,078	+				+0.4
2,406,078	+				-0.9
2,406,078	+				-0.3
2,406,078	+				-0.6
2,406,079	-				+1.5
2,406,079	-				-2.4
2,406,079	-				+0.2
2,406,079	-				-0.9
2,406,081	+				-0.4
2,406,097	+				-1.0
2,406,098	-				+0.2
2,406,098	-				+0.4
2,406,122	+				-0.4
2,406,122	+				+0.9
2,406,141	-				-1.8
2,406,348	+		Sama_1977	0.34	+1.4
2,406,348	+		Sama_1977	0.34	-1.2
2,406,349	-		Sama_1977	0.34	+1.6
2,406,412	-		Sama_1977	0.47	+1.3
2,406,463	-		Sama_1977	0.57	-2.3
2,406,506	+		Sama_1977	0.66	-0.7
2,406,507	-		Sama_1977	0.67	-0.0
2,406,516	+		Sama_1977	0.69	-1.1
2,406,516	+		Sama_1977	0.69	+0.2
2,406,516	+		Sama_1977	0.69	+0.9
2,406,517	-		Sama_1977	0.69	+0.8
2,406,517	-		Sama_1977	0.69	-0.6
2,406,521	+		Sama_1977	0.70	-0.8
2,406,522	-		Sama_1977	0.70	-1.4
2,406,552	-		Sama_1977	0.76	+0.4
2,406,637	+				-0.3
2,406,638	-				-0.8
2,406,638	-				+0.7
2,406,638	-				-0.3
2,406,671	+				+1.1
2,406,672	-				+0.5
2,406,690	+				-2.0
2,406,715	-				-1.0
2,406,715	-				-0.6
2,406,809	-				-1.1
2,406,813	-				-2.3
2,406,851	-				+1.2
2,406,983	-		Sama_1978	0.15	-2.0
2,407,137	+		Sama_1978	0.27	-1.4
2,407,426	+		Sama_1978	0.51	-1.1
2,407,482	-		Sama_1978	0.55	-1.5
2,407,482	-		Sama_1978	0.55	-1.1
2,407,498	-		Sama_1978	0.57	-0.8
2,407,532	+		Sama_1978	0.59	+0.2
2,407,584	+		Sama_1978	0.64	-1.8
2,407,585	-		Sama_1978	0.64	-2.3
2,407,585	-		Sama_1978	0.64	-0.8
2,407,703	-		Sama_1978	0.73	-2.5
2,407,807	-		Sama_1978	0.82	-1.4
2,407,852	-		Sama_1978	0.85	+1.2
2,408,058	-				-1.4
2,408,058	-				-2.3
2,408,068	-				-0.8
2,408,524	-				-0.8
2,408,543	-				-0.5
2,408,552	+				-0.4
2,408,552	+				+0.5
2,408,553	-				+0.4