Strain Fitness in Shewanella amazonensis SB2B around Sama_1974

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,401,712	+	sbcB	Sama_1973	0.39	+0.6
2,401,712	+	sbcB	Sama_1973	0.39	-0.4
2,401,712	+	sbcB	Sama_1973	0.39	+0.2
2,401,712	+	sbcB	Sama_1973	0.39	+0.2
2,401,713	-	sbcB	Sama_1973	0.39	-1.3
2,401,769	+	sbcB	Sama_1973	0.43	+2.4
2,401,769	+	sbcB	Sama_1973	0.43	-0.4
2,401,772	+	sbcB	Sama_1973	0.44	-1.3
2,401,772	+	sbcB	Sama_1973	0.44	+0.7
2,401,772	+	sbcB	Sama_1973	0.44	-0.6
2,401,773	-	sbcB	Sama_1973	0.44	+0.2
2,401,773	-	sbcB	Sama_1973	0.44	-1.4
2,401,818	+	sbcB	Sama_1973	0.47	-0.9
2,401,887	+	sbcB	Sama_1973	0.52	-1.1
2,401,887	+	sbcB	Sama_1973	0.52	+0.0
2,401,888	-	sbcB	Sama_1973	0.52	-0.4
2,401,888	-	sbcB	Sama_1973	0.52	+1.6
2,401,906	+	sbcB	Sama_1973	0.53	+0.5
2,401,907	-	sbcB	Sama_1973	0.53	+0.2
2,401,907	-	sbcB	Sama_1973	0.53	+0.8
2,401,915	+	sbcB	Sama_1973	0.54	+1.0
2,402,000	+	sbcB	Sama_1973	0.60	-0.1
2,402,001	-	sbcB	Sama_1973	0.60	-0.4
2,402,065	+	sbcB	Sama_1973	0.64	-0.6
2,402,065	+	sbcB	Sama_1973	0.64	+0.7
2,402,065	+	sbcB	Sama_1973	0.64	-0.1
2,402,131	+	sbcB	Sama_1973	0.69	-0.5
2,402,131	+	sbcB	Sama_1973	0.69	+0.0
2,402,131	+	sbcB	Sama_1973	0.69	-0.2
2,402,131	+	sbcB	Sama_1973	0.69	+2.2
2,402,131	+	sbcB	Sama_1973	0.69	+1.7
2,402,132	-	sbcB	Sama_1973	0.69	-0.8
2,402,224	+	sbcB	Sama_1973	0.76	-0.8
2,402,225	-	sbcB	Sama_1973	0.76	-0.8
2,402,253	-	sbcB	Sama_1973	0.78	+0.9
2,402,301	+	sbcB	Sama_1973	0.81	-0.6
2,402,325	+	sbcB	Sama_1973	0.83	-0.3
2,402,396	+	sbcB	Sama_1973	0.88	-1.7
2,402,414	+	sbcB	Sama_1973	0.89	-1.9
2,402,471	+				+0.1
2,402,472	-				-1.3
2,402,472	-				-0.7
2,402,544	+				+0.6
2,402,544	+				+1.2
2,402,544	+				-1.4
2,402,545	-				+0.7
2,402,553	-				+0.8
2,402,567	+				-1.0
2,402,594	+				-0.8
2,402,594	+				+0.0
2,402,594	+				+0.9
2,402,625	+				-0.2
2,402,625	+				+1.5
2,402,625	+				-0.4
2,402,625	+				-0.6
2,402,626	-				-0.4
2,402,667	-				-0.0
2,402,776	+		Sama_1974	0.12	+0.7
2,402,866	+		Sama_1974	0.22	+0.6
2,402,871	-		Sama_1974	0.23	+0.0
2,402,871	-		Sama_1974	0.23	+0.5
2,402,877	+		Sama_1974	0.24	+0.6
2,402,877	+		Sama_1974	0.24	+0.4
2,403,001	+		Sama_1974	0.37	-1.1
2,403,031	+		Sama_1974	0.41	-1.4
2,403,032	-		Sama_1974	0.41	+0.2
2,403,068	+		Sama_1974	0.45	+1.1
2,403,141	+		Sama_1974	0.53	+0.6
2,403,142	-		Sama_1974	0.53	+1.6
2,403,150	+		Sama_1974	0.54	+0.7
2,403,180	-		Sama_1974	0.58	+0.9
2,403,273	+		Sama_1974	0.68	-0.4
2,403,365	+		Sama_1974	0.78	+0.4
2,403,567	+				-0.3
2,403,567	+				+0.2
2,403,567	+				+0.4
2,403,568	-				+0.2
2,403,568	-				+0.6
2,403,623	-				-0.4
2,403,633	+				-0.8
2,403,650	-				+0.7
2,403,831	-		Sama_1975	0.20	-0.4
2,403,872	-		Sama_1975	0.24	-0.6
2,403,872	-		Sama_1975	0.24	-0.2
2,403,872	-		Sama_1975	0.24	-0.4
2,403,874	-		Sama_1975	0.25	-0.4
2,403,874	-		Sama_1975	0.25	-1.1
2,404,001	-		Sama_1975	0.39	+0.2
2,404,091	+		Sama_1975	0.49	-1.6
2,404,092	-		Sama_1975	0.49	+0.7
2,404,308	-		Sama_1975	0.74	-0.2
2,404,445	-		Sama_1975	0.90	-0.7
2,404,446	+		Sama_1975	0.90	+1.5
2,404,446	+		Sama_1975	0.90	+0.8
2,404,447	-				-1.5
2,404,447	-				-0.6
2,404,447	-				+1.2
2,404,447	-				+0.4
2,404,447	-				+0.0
2,404,447	-				+1.8