Strain Fitness in Shewanella amazonensis SB2B around Sama_1965

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,393,245	+				-3.8
2,393,245	+				-0.5
2,393,245	+				-0.4
2,393,246	-				-0.8
2,393,246	-				-1.5
2,393,246	-				-0.8
2,393,246	-				-2.3
2,393,246	-				-3.2
2,393,247	+				+0.9
2,393,247	+				+0.6
2,393,247	+				-1.6
2,393,248	-				-0.9
2,393,248	-				-2.0
2,393,248	-				+0.4
2,393,248	-				-2.3
2,393,248	-				-1.0
2,393,248	-				-1.3
2,393,248	-				-0.6
2,393,248	-				-0.6
2,393,248	-				-1.8
2,393,248	-				-0.7
2,393,248	-				+1.6
2,393,248	-				-1.1
2,393,248	-				-1.1
2,393,249	+				-3.1
2,393,249	+				-2.0
2,393,250	-				+0.2
2,393,250	-				-2.1
2,393,250	-				-1.4
2,393,250	-				-1.8
2,393,250	-				-1.4
2,393,250	-				-1.6
2,393,250	-				-1.1
2,393,250	-				-0.8
2,393,250	-				-3.3
2,393,252	-				-0.8
2,393,252	-				-2.1
2,393,252	-				-1.1
2,393,260	-				-1.3
2,393,260	-				-0.8
2,393,260	-				-0.1
2,393,260	-				-0.6
2,393,263	-				-1.4
2,393,263	-				+0.4
2,393,309	-				-2.8
2,393,347	-				-1.1
2,393,347	-				-0.1
2,393,350	-		Sama_1964	0.10	-2.3
2,393,460	+		Sama_1964	0.23	-2.6
2,393,461	-		Sama_1964	0.23	-0.7
2,393,461	-		Sama_1964	0.23	+0.5
2,393,461	-		Sama_1964	0.23	-0.5
2,393,461	-		Sama_1964	0.23	-1.2
2,393,461	-		Sama_1964	0.23	-0.2
2,393,461	-		Sama_1964	0.23	+0.7
2,393,461	-		Sama_1964	0.23	+0.2
2,393,461	-		Sama_1964	0.23	+0.5
2,393,461	-		Sama_1964	0.23	-1.6
2,393,481	-		Sama_1964	0.25	+0.8
2,393,482	-		Sama_1964	0.25	-0.2
2,393,503	-		Sama_1964	0.28	+1.4
2,393,503	-		Sama_1964	0.28	+1.0
2,393,503	-		Sama_1964	0.28	-0.7
2,393,503	-		Sama_1964	0.28	+0.7
2,393,513	-		Sama_1964	0.29	-1.6
2,393,549	-		Sama_1964	0.33	+0.3
2,393,614	-		Sama_1964	0.40	+1.9
2,393,671	+		Sama_1964	0.47	+0.1
2,393,672	-		Sama_1964	0.47	-0.4
2,393,770	+		Sama_1964	0.58	-2.8
2,393,771	-		Sama_1964	0.58	+2.2
2,393,836	+		Sama_1964	0.66	-1.9
2,393,837	-		Sama_1964	0.66	+0.1
2,394,033	-		Sama_1964	0.88	+1.4
2,394,075	-				+0.4
2,394,075	-				-1.8
2,394,075	-				-0.4
2,394,075	-				+0.6
2,394,085	-				+3.5
2,394,118	-				+1.5
2,394,172	-				-0.4
2,394,234	-				-1.6
2,394,234	-				-0.8
2,394,244	-				-0.1
2,394,254	-				+1.8
2,394,254	-				+1.2
2,394,254	-				-2.0
2,394,293	-		Sama_1965	0.35	-1.1
2,394,293	-		Sama_1965	0.35	-1.5
2,394,303	-		Sama_1965	0.42	-1.4
2,394,387	-				+0.3
2,394,414	-				-1.3
2,394,414	-				-2.1
2,394,515	+				-1.3
2,394,516	-				+0.9
2,394,516	-				+0.2
2,394,537	-				-0.1
2,394,537	-				-0.7
2,394,602	+				-0.6
2,394,602	+				-0.2
2,394,602	+				-0.4
2,394,692	+				-0.0
2,394,692	+				-1.6
2,394,692	+				+0.2
2,394,693	-				+0.3
2,394,693	-				+0.6
2,394,693	-				-1.8
2,394,705	+				-1.1
2,394,705	+				-0.2
2,394,706	-				+1.2
2,394,709	+				-0.8
2,394,709	+				+0.3
2,394,777	+				-1.8
2,394,777	+				+1.0
2,394,778	-				-1.7
2,394,778	-				+1.1
2,394,778	+				-0.0
2,394,778	-				-0.1
2,394,779	+				+0.2
2,394,780	-				-0.6
2,394,805	-				-0.3
2,394,812	-				-0.8
2,394,812	-				+1.8
2,394,841	+				+1.0
2,394,843	+				+0.6
2,394,843	+				-0.6
2,394,844	-				+0.1
2,394,844	-				+1.4
2,394,844	-				-0.3
2,394,988	-		Sama_1966	0.12	+0.7
2,394,988	-		Sama_1966	0.12	-1.5
2,395,040	-		Sama_1966	0.19	-1.0
2,395,056	+		Sama_1966	0.20	-0.1
2,395,056	+		Sama_1966	0.20	-0.8
2,395,056	+		Sama_1966	0.20	+0.2
2,395,118	+		Sama_1966	0.28	+0.1
2,395,121	+		Sama_1966	0.28	-1.7
2,395,220	-		Sama_1966	0.40	-0.7
2,395,229	+		Sama_1966	0.41	-0.9
2,395,229	+		Sama_1966	0.41	+1.2
2,395,240	-		Sama_1966	0.43	+0.7
2,395,240	-		Sama_1966	0.43	+1.7
2,395,240	-		Sama_1966	0.43	-1.3
2,395,285	-		Sama_1966	0.48	+1.5
2,395,312	+		Sama_1966	0.51	-0.8
2,395,312	+		Sama_1966	0.51	-0.9
2,395,312	+		Sama_1966	0.51	-0.6
2,395,312	+		Sama_1966	0.51	-2.0
2,395,313	-		Sama_1966	0.51	-0.3
2,395,313	-		Sama_1966	0.51	-1.4
2,395,313	-		Sama_1966	0.51	-2.0
2,395,368	+		Sama_1966	0.58	-0.1
2,395,368	+		Sama_1966	0.58	-2.4
2,395,368	+		Sama_1966	0.58	-0.9
2,395,369	-		Sama_1966	0.58	-0.8
2,395,377	+		Sama_1966	0.59	+0.0