Strain Fitness in Shewanella amazonensis SB2B around Sama_1955

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,383,098	+		Sama_1954	0.44	+1.6
2,383,098	+		Sama_1954	0.44	-0.8
2,383,099	-		Sama_1954	0.44	-0.6
2,383,336	-		Sama_1954	0.60	+0.5
2,383,336	-		Sama_1954	0.60	-0.1
2,383,336	-		Sama_1954	0.60	-0.7
2,383,358	+		Sama_1954	0.61	+1.4
2,383,358	+		Sama_1954	0.61	+0.6
2,383,358	+		Sama_1954	0.61	-0.0
2,383,358	+		Sama_1954	0.61	+1.5
2,383,359	-		Sama_1954	0.61	-0.3
2,383,359	-		Sama_1954	0.61	-0.4
2,383,359	-		Sama_1954	0.61	-0.6
2,383,400	+		Sama_1954	0.64	-0.1
2,383,406	+		Sama_1954	0.64	-0.3
2,383,406	+		Sama_1954	0.64	-0.4
2,383,406	+		Sama_1954	0.64	+1.7
2,383,453	-		Sama_1954	0.68	-0.5
2,383,697	+		Sama_1954	0.84	+0.5
2,383,977	-				-0.3
2,383,987	+				+0.9
2,384,080	+				-0.4
2,384,080	+				-0.7
2,384,080	+				-1.0
2,384,080	+				-0.0
2,384,081	-				-0.4
2,384,081	-				-0.9
2,384,081	-				+0.3
2,384,081	-				+0.2
2,384,081	-				+0.0
2,384,084	+				-0.4
2,384,084	+				-1.6
2,384,084	+				-0.2
2,384,085	-				+0.6
2,384,085	-				-0.4
2,384,085	-				-1.2
2,384,085	-				-0.6
2,384,085	-				+0.3
2,384,085	-				-0.8
2,384,091	+				-1.7
2,384,091	+				-1.4
2,384,091	+				+2.1
2,384,091	+				-2.5
2,384,091	+				-0.0
2,384,091	+				-1.3
2,384,091	+				+0.6
2,384,091	+				+1.1
2,384,092	-				-0.6
2,384,092	-				+0.3
2,384,092	-				-1.1
2,384,092	-				-2.3
2,384,092	-				+0.6
2,384,092	-				+0.2
2,384,092	-				-1.1
2,384,092	-				+0.3
2,384,092	-				+0.8
2,384,092	-				-1.1
2,384,112	+				-1.9
2,384,115	+				+0.6
2,384,116	-				+0.7
2,384,116	-				+1.2
2,384,153	+				-1.6
2,384,256	-				-0.0
2,384,256	-				+1.0
2,384,367	-		Sama_1955	0.12	-0.1
2,384,385	-		Sama_1955	0.13	-0.4
2,384,385	-		Sama_1955	0.13	-0.6
2,384,388	+		Sama_1955	0.13	-1.0
2,384,389	-		Sama_1955	0.13	+1.1
2,384,389	-		Sama_1955	0.13	+0.4
2,384,389	-		Sama_1955	0.13	-1.6
2,384,394	+		Sama_1955	0.13	+0.8
2,384,505	+		Sama_1955	0.17	-0.5
2,384,518	+		Sama_1955	0.18	+0.3
2,384,559	+		Sama_1955	0.19	-0.0
2,384,560	-		Sama_1955	0.20	-0.4
2,384,608	+		Sama_1955	0.21	-0.6
2,384,608	+		Sama_1955	0.21	+0.5
2,384,608	+		Sama_1955	0.21	-0.1
2,384,608	+		Sama_1955	0.21	+0.4
2,384,609	-		Sama_1955	0.21	+0.3
2,384,609	-		Sama_1955	0.21	-2.5
2,384,609	-		Sama_1955	0.21	-1.4
2,384,612	+		Sama_1955	0.22	-1.4
2,384,612	+		Sama_1955	0.22	+0.2
2,384,613	-		Sama_1955	0.22	+1.2
2,384,613	-		Sama_1955	0.22	-0.7
2,384,613	-		Sama_1955	0.22	-0.1
2,384,623	-		Sama_1955	0.22	-1.4
2,384,693	+		Sama_1955	0.25	+0.6
2,384,693	+		Sama_1955	0.25	-0.3
2,384,694	-		Sama_1955	0.25	-1.2
2,384,694	-		Sama_1955	0.25	+0.5
2,384,694	-		Sama_1955	0.25	-2.0
2,384,699	+		Sama_1955	0.25	+0.1
2,384,699	+		Sama_1955	0.25	-1.8
2,384,700	-		Sama_1955	0.25	-1.4
2,384,700	-		Sama_1955	0.25	-1.4
2,384,700	-		Sama_1955	0.25	-0.9
2,384,700	-		Sama_1955	0.25	+1.2
2,384,700	-		Sama_1955	0.25	-0.7
2,384,700	-		Sama_1955	0.25	-0.3
2,384,700	-		Sama_1955	0.25	+2.9
2,384,755	+		Sama_1955	0.27	-0.5
2,384,755	+		Sama_1955	0.27	-0.3
2,384,756	-		Sama_1955	0.27	+1.7
2,384,778	+		Sama_1955	0.28	-0.1
2,384,869	+		Sama_1955	0.32	+0.4
2,384,870	-		Sama_1955	0.32	-1.1
2,384,900	+		Sama_1955	0.33	+0.2
2,384,919	-		Sama_1955	0.34	-2.1
2,384,919	-		Sama_1955	0.34	+0.7
2,384,922	+		Sama_1955	0.34	+1.6
2,384,922	+		Sama_1955	0.34	-1.0
2,384,922	+		Sama_1955	0.34	+1.2
2,385,010	+		Sama_1955	0.37	-0.9
2,385,010	+		Sama_1955	0.37	+1.6
2,385,011	-		Sama_1955	0.37	+0.9
2,385,011	-		Sama_1955	0.37	+0.3
2,385,011	-		Sama_1955	0.37	+0.8
2,385,011	-		Sama_1955	0.37	-0.5
2,385,011	-		Sama_1955	0.37	+0.8
2,385,011	-		Sama_1955	0.37	+0.4
2,385,059	+		Sama_1955	0.39	-1.1
2,385,062	+		Sama_1955	0.39	-1.0
2,385,063	-		Sama_1955	0.39	+1.2
2,385,220	+		Sama_1955	0.45	+0.2
2,385,220	+		Sama_1955	0.45	-0.3
2,385,221	-		Sama_1955	0.45	+1.5
2,385,221	-		Sama_1955	0.45	+0.6
2,385,221	-		Sama_1955	0.45	+0.9
2,385,280	+		Sama_1955	0.48	+1.7
2,385,280	+		Sama_1955	0.48	+1.0
2,385,280	+		Sama_1955	0.48	+0.2
2,385,280	+		Sama_1955	0.48	-0.5
2,385,283	-		Sama_1955	0.48	-2.8
2,385,283	-		Sama_1955	0.48	-0.4
2,385,393	-		Sama_1955	0.52	-1.6
2,385,393	-		Sama_1955	0.52	+1.2
2,385,423	+		Sama_1955	0.53	-0.8
2,385,611	+		Sama_1955	0.61	-0.0
2,385,705	-		Sama_1955	0.64	+0.1
2,385,764	+		Sama_1955	0.67	-0.4
2,385,764	+		Sama_1955	0.67	+0.4
2,385,764	+		Sama_1955	0.67	+0.6
2,385,764	+		Sama_1955	0.67	+0.2
2,385,764	+		Sama_1955	0.67	+0.4
2,385,764	+		Sama_1955	0.67	+0.8
2,385,765	-		Sama_1955	0.67	-0.8
2,385,812	+		Sama_1955	0.69	+0.8
2,385,812	+		Sama_1955	0.69	-0.1
2,385,812	+		Sama_1955	0.69	-0.3
2,385,813	-		Sama_1955	0.69	+0.9
2,385,906	+		Sama_1955	0.72	+0.0
2,385,907	-		Sama_1955	0.72	+0.9
2,385,907	-		Sama_1955	0.72	-0.1
2,385,989	+		Sama_1955	0.76	-1.9
2,385,989	+		Sama_1955	0.76	-0.8
2,386,037	+		Sama_1955	0.77	-0.4
2,386,038	-		Sama_1955	0.77	-0.6
2,386,038	-		Sama_1955	0.77	-0.9
2,386,070	+		Sama_1955	0.79	+1.7
2,386,070	+		Sama_1955	0.79	+1.1
2,386,203	+		Sama_1955	0.84	+1.9
2,386,203	+		Sama_1955	0.84	-0.6
2,386,204	-		Sama_1955	0.84	+0.6
2,386,238	+		Sama_1955	0.85	-0.2
2,386,239	-		Sama_1955	0.85	+0.1
2,386,312	-		Sama_1955	0.88	-0.5
2,386,312	-		Sama_1955	0.88	+0.0
2,386,312	-		Sama_1955	0.88	-2.3
2,386,392	+				+0.4
2,386,412	+				-0.2
2,386,412	+				-1.7
2,386,576	-				+1.0
2,386,576	-				+1.2
2,386,595	+				-0.8
2,386,630	+				+0.8
2,386,659	+				+1.7
2,386,693	-				+0.1
2,386,877	+		Sama_1956	0.31	+1.9
2,386,933	-		Sama_1956	0.37	-0.4
2,386,968	-		Sama_1956	0.41	+1.1
2,386,978	-		Sama_1956	0.43	+1.8
2,387,035	+		Sama_1956	0.49	+0.4
2,387,035	+		Sama_1956	0.49	+1.8
2,387,035	+		Sama_1956	0.49	+1.4
2,387,035	+		Sama_1956	0.49	+1.2
2,387,036	-		Sama_1956	0.49	+0.5
2,387,036	-		Sama_1956	0.49	+2.3
2,387,074	+		Sama_1956	0.54	+0.9
2,387,075	-		Sama_1956	0.54	+0.6
2,387,075	-		Sama_1956	0.54	+1.6
2,387,153	+		Sama_1956	0.63	+1.0
2,387,154	-		Sama_1956	0.63	-0.1
2,387,250	-		Sama_1956	0.74	+1.1
2,387,335	-		Sama_1956	0.84	+1.8
2,387,335	-		Sama_1956	0.84	+1.6
2,387,336	+		Sama_1956	0.84	-0.2
2,387,337	-		Sama_1956	0.84	+1.4
2,387,337	-		Sama_1956	0.84	+0.7
2,387,348	+		Sama_1956	0.85	+0.7