Strain Fitness in Shewanella amazonensis SB2B around Sama_1913

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,339,234	-		Sama_1911	0.51	-1.5
2,339,234	-		Sama_1911	0.51	-1.8
2,339,290	-		Sama_1911	0.56	+1.8
2,339,290	-		Sama_1911	0.56	+0.2
2,339,290	-		Sama_1911	0.56	-2.4
2,339,349	-		Sama_1911	0.61	-1.1
2,339,394	-		Sama_1911	0.65	-0.7
2,339,416	-		Sama_1911	0.67	-1.0
2,339,424	+		Sama_1911	0.68	-0.8
2,339,424	+		Sama_1911	0.68	-0.3
2,339,546	+		Sama_1911	0.79	-2.0
2,339,547	-		Sama_1911	0.79	-0.8
2,339,547	-		Sama_1911	0.79	+0.9
2,339,594	+		Sama_1911	0.83	-1.8
2,339,688	+				-1.4
2,339,688	+				-2.1
2,339,760	+				+0.2
2,339,760	+				+0.2
2,339,761	-				+0.7
2,339,761	-				-1.7
2,339,796	+				-1.5
2,339,797	-				-0.4
2,339,802	+				+0.6
2,339,802	+				-2.3
2,339,802	+				-1.3
2,339,803	-				-1.8
2,339,803	-				+0.7
2,339,803	-				+0.7
2,339,825	-				+0.3
2,339,845	-				-0.1
2,339,852	-				-1.6
2,339,970	-		Sama_1912	0.55	-1.1
2,340,103	-				+0.0
2,340,106	-				-0.5
2,340,348	+		Sama_1913	0.12	-2.3
2,340,348	+		Sama_1913	0.12	-2.4
2,340,348	+		Sama_1913	0.12	-1.8
2,340,348	+		Sama_1913	0.12	-1.6
2,340,405	+		Sama_1913	0.16	-1.6
2,340,405	+		Sama_1913	0.16	-1.8
2,340,411	-		Sama_1913	0.16	-3.8
2,340,533	+		Sama_1913	0.24	-2.0
2,340,534	-		Sama_1913	0.24	-2.1
2,340,688	+		Sama_1913	0.35	+1.2
2,340,688	+		Sama_1913	0.35	-1.8
2,340,689	-		Sama_1913	0.35	-1.8
2,340,689	-		Sama_1913	0.35	-0.8
2,340,689	-		Sama_1913	0.35	-1.6
2,340,693	-		Sama_1913	0.35	+0.2
2,340,693	-		Sama_1913	0.35	-2.1
2,340,768	+		Sama_1913	0.40	-1.6
2,340,769	-		Sama_1913	0.40	-2.4
2,340,769	-		Sama_1913	0.40	-1.1
2,340,802	+		Sama_1913	0.43	-3.5
2,340,941	-		Sama_1913	0.52	-2.7
2,340,970	-		Sama_1913	0.54	-1.4
2,340,982	-		Sama_1913	0.55	-1.1
2,340,982	-		Sama_1913	0.55	-2.0
2,341,003	-		Sama_1913	0.56	-3.1
2,341,044	+		Sama_1913	0.59	-1.4
2,341,045	-		Sama_1913	0.59	-1.6
2,341,045	-		Sama_1913	0.59	+1.2
2,341,098	+		Sama_1913	0.63	-1.4
2,341,099	-		Sama_1913	0.63	-0.4
2,341,099	-		Sama_1913	0.63	+0.2
2,341,099	-		Sama_1913	0.63	-2.3
2,341,099	-		Sama_1913	0.63	-2.4
2,341,100	+		Sama_1913	0.63	-0.8
2,341,100	+		Sama_1913	0.63	-1.1
2,341,101	-		Sama_1913	0.63	-2.3
2,341,307	+		Sama_1913	0.77	-0.4
2,341,307	+		Sama_1913	0.77	-2.3
2,341,308	-		Sama_1913	0.77	-1.1
2,341,319	-		Sama_1913	0.78	-2.6
2,341,344	+		Sama_1913	0.79	-2.0
2,341,344	+		Sama_1913	0.79	-3.1
2,341,345	-		Sama_1913	0.79	-1.4
2,341,345	-		Sama_1913	0.79	-2.1
2,341,345	-		Sama_1913	0.79	-2.0
2,341,346	+		Sama_1913	0.80	-1.4
2,341,346	+		Sama_1913	0.80	-2.1
2,341,346	+		Sama_1913	0.80	-1.8
2,341,347	-		Sama_1913	0.80	-1.3
2,341,425	+		Sama_1913	0.85	-1.8
2,341,463	+		Sama_1913	0.87	-0.4
2,341,463	+		Sama_1913	0.87	-2.0
2,341,515	+				-1.6
2,341,515	+				-2.4
2,341,515	+				+0.2
2,341,555	-				-2.4
2,341,555	-				-1.1
2,341,611	-				-2.0
2,341,611	-				-1.6
2,341,639	+				+0.2
2,341,640	-				-1.1
2,341,640	-				+0.6
2,341,645	-				-1.6
2,341,722	-				+1.1
2,341,738	-				+0.4
2,341,830	+		Sama_1914	0.26	+1.2
2,341,830	+		Sama_1914	0.26	-1.1
2,341,831	-		Sama_1914	0.26	-2.3
2,341,849	+		Sama_1914	0.31	-2.0
2,341,869	+		Sama_1914	0.37	-1.1
2,341,881	+		Sama_1914	0.40	-0.1
2,341,934	+		Sama_1914	0.56	+0.5
2,341,935	-		Sama_1914	0.56	-0.1
2,341,935	-		Sama_1914	0.56	+0.2
2,341,935	-		Sama_1914	0.56	+1.2
2,341,936	+		Sama_1914	0.56	+0.6
2,341,936	+		Sama_1914	0.56	-1.4
2,341,936	+		Sama_1914	0.56	+1.6
2,341,937	-		Sama_1914	0.56	+1.1
2,341,980	+		Sama_1914	0.69	-1.2
2,341,983	+		Sama_1914	0.70	+0.4
2,341,983	+		Sama_1914	0.70	+0.2
2,342,117	+				-0.7
2,342,130	+				+0.8
2,342,170	+		Sama_1915	0.18	+0.4
2,342,203	+		Sama_1915	0.27	+0.2
2,342,203	+		Sama_1915	0.27	-1.8
2,342,204	-		Sama_1915	0.27	-0.4
2,342,217	+		Sama_1915	0.30	-0.6
2,342,278	+		Sama_1915	0.46	-0.4
2,342,279	-		Sama_1915	0.46	+1.2
2,342,315	-		Sama_1915	0.55	+0.2
2,342,315	-		Sama_1915	0.55	+0.9
2,342,339	+		Sama_1915	0.61	-0.0
2,342,339	+		Sama_1915	0.61	+0.9
2,342,340	-		Sama_1915	0.62	-2.5
2,342,341	+		Sama_1915	0.62	+0.9
2,342,341	+		Sama_1915	0.62	+0.4
2,342,341	+		Sama_1915	0.62	-2.0
2,342,341	+		Sama_1915	0.62	+0.5
2,342,341	+		Sama_1915	0.62	-0.1
2,342,342	-		Sama_1915	0.62	+1.3
2,342,342	-		Sama_1915	0.62	+1.2
2,342,342	-		Sama_1915	0.62	-1.6
2,342,342	-		Sama_1915	0.62	-0.1
2,342,342	-		Sama_1915	0.62	-1.1
2,342,420	-		Sama_1915	0.82	+1.9
2,342,488	+				+0.1
2,342,489	-				+0.1
2,342,595	-				+0.4
2,342,608	-				-1.2