Strain Fitness in Shewanella amazonensis SB2B around Sama_1902

Experiment: Paraquat dichloride 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1901 and Sama_1902 overlap by 4 nucleotidesSama_1902 and ddl are separated by 99 nucleotides Sama_1901: Sama_1901 - exodeoxyribonuclease V, beta subunit (RefSeq), at 2,322,070 to 2,325,744 _1901 Sama_1902: Sama_1902 - exodeoxyribonuclease V (RefSeq), at 2,325,741 to 2,327,636 _1902 Sama_1903: ddl - D-alanyl-alanine synthetase A (RefSeq), at 2,327,736 to 2,328,746 ddl Position (kb) 2325 2326 2327 2328Strain fitness (log2 ratio) -1 0 1at 2325.726 kb on + strandat 2325.734 kb on + strandat 2325.740 kb on + strandat 2325.740 kb on + strandat 2325.746 kb on - strandat 2327.621 kb on - strandat 2327.634 kb on + strandat 2327.635 kb on - strandat 2327.635 kb on - strandat 2327.676 kb on + strandat 2327.676 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml
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2,325,726 + +1.0
2,325,734 + -0.8
2,325,740 + -0.8
2,325,740 + +0.6
2,325,746 - -1.4
2,327,621 - -0.8
2,327,634 + -1.1
2,327,635 - -0.6
2,327,635 - -0.0
2,327,676 + +0.6
2,327,676 + -1.1

Or see this region's nucleotide sequence