Strain Fitness in Shewanella amazonensis SB2B around Sama_1883

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,297,280	+				-0.5
2,297,335	-				-0.4
2,297,641	+		Sama_1882	0.34	+0.5
2,297,671	-		Sama_1882	0.37	+0.4
2,297,671	-		Sama_1882	0.37	-0.6
2,297,851	+		Sama_1882	0.57	-0.2
2,297,851	+		Sama_1882	0.57	+0.3
2,297,851	+		Sama_1882	0.57	+2.2
2,297,935	+		Sama_1882	0.66	+1.3
2,297,935	+		Sama_1882	0.66	+0.4
2,297,936	-		Sama_1882	0.66	+2.2
2,297,936	-		Sama_1882	0.66	-0.3
2,297,941	+		Sama_1882	0.67	-0.1
2,297,942	-		Sama_1882	0.67	+1.3
2,297,956	+		Sama_1882	0.69	+0.8
2,297,956	+		Sama_1882	0.69	-3.4
2,297,957	-		Sama_1882	0.69	-1.1
2,297,957	-		Sama_1882	0.69	+0.6
2,297,990	-		Sama_1882	0.72	+0.8
2,297,990	-		Sama_1882	0.72	+2.0
2,298,179	-				-0.9
2,298,344	-		Sama_1883	0.15	+2.1
2,298,371	+		Sama_1883	0.18	+1.8
2,298,371	+		Sama_1883	0.18	+1.0
2,298,371	+		Sama_1883	0.18	-0.3
2,298,371	+		Sama_1883	0.18	+0.6
2,298,442	+		Sama_1883	0.28	+1.2
2,298,442	+		Sama_1883	0.28	+0.9
2,298,443	-		Sama_1883	0.28	+1.8
2,298,446	-		Sama_1883	0.29	+1.6
2,298,455	+		Sama_1883	0.30	+1.9
2,298,456	-		Sama_1883	0.30	+0.8
2,298,456	-		Sama_1883	0.30	-0.6
2,298,499	-		Sama_1883	0.36	-1.4
2,298,516	+		Sama_1883	0.38	+1.3
2,298,517	-		Sama_1883	0.39	+2.2
2,298,517	-		Sama_1883	0.39	+0.3
2,298,523	+		Sama_1883	0.39	-0.4
2,298,524	-		Sama_1883	0.40	-1.6
2,298,560	-		Sama_1883	0.45	+0.1
2,298,604	-		Sama_1883	0.51	+1.9
2,298,615	+		Sama_1883	0.52	+0.7
2,298,616	-		Sama_1883	0.52	-0.2
2,298,624	-		Sama_1883	0.53	+1.0
2,298,715	+		Sama_1883	0.66	-0.4
2,298,715	+		Sama_1883	0.66	+1.8
2,298,715	+		Sama_1883	0.66	+1.3
2,298,715	+		Sama_1883	0.66	+1.2
2,298,716	-		Sama_1883	0.66	-0.4
2,298,716	-		Sama_1883	0.66	+1.3
2,298,716	-		Sama_1883	0.66	-0.8
2,298,716	-		Sama_1883	0.66	+0.7
2,298,716	-		Sama_1883	0.66	+0.8
2,298,716	-		Sama_1883	0.66	+1.3
2,298,716	-		Sama_1883	0.66	+2.2
2,298,716	-		Sama_1883	0.66	-1.3
2,298,716	-		Sama_1883	0.66	-0.4
2,298,718	-		Sama_1883	0.66	+1.3
2,298,737	-		Sama_1883	0.69	-0.0
2,298,737	-		Sama_1883	0.69	+1.0
2,298,737	-		Sama_1883	0.69	+1.2
2,298,737	-		Sama_1883	0.69	+1.3
2,298,801	+		Sama_1883	0.78	-0.9
2,298,802	-		Sama_1883	0.78	+0.6
2,298,802	-		Sama_1883	0.78	+0.4
2,298,810	+		Sama_1883	0.79	+0.2
2,298,810	+		Sama_1883	0.79	+1.7
2,298,810	+		Sama_1883	0.79	+1.2
2,298,810	+		Sama_1883	0.79	+0.8
2,298,810	+		Sama_1883	0.79	+0.3
2,298,810	+		Sama_1883	0.79	+1.5
2,298,810	+		Sama_1883	0.79	+1.0
2,298,810	+		Sama_1883	0.79	+1.3
2,298,811	-		Sama_1883	0.79	+2.3
2,298,811	-		Sama_1883	0.79	+0.2
2,298,811	-		Sama_1883	0.79	+1.4
2,298,811	-		Sama_1883	0.79	+0.7
2,298,811	-		Sama_1883	0.79	+0.9
2,298,847	-		Sama_1883	0.84	+0.5
2,298,885	+		Sama_1883	0.89	+0.0
2,298,886	-		Sama_1883	0.90	+1.4
2,298,891	+				+2.1
2,298,892	-				+3.5
2,298,992	+				-0.2
2,298,997	+				+0.4
2,298,997	+				+1.0
2,298,998	-				-0.6
2,298,998	-				-0.0
2,298,998	-				+0.2
2,298,998	-				+0.3
2,299,003	-				-0.8
2,299,003	-				+1.5
2,299,012	-				+0.1
2,299,016	-				-0.4
2,299,016	-				-2.4
2,299,036	-				-1.6
2,299,038	+				+0.2
2,299,039	-				+0.2
2,299,183	-				+0.8
2,299,252	+		Sama_1884	0.14	+0.6
2,299,253	-		Sama_1884	0.14	+0.9
2,299,283	-		Sama_1884	0.18	+1.0
2,299,283	-		Sama_1884	0.18	-2.1
2,299,283	-		Sama_1884	0.18	-0.2
2,299,310	+		Sama_1884	0.21	+1.2
2,299,311	-		Sama_1884	0.22	-0.0
2,299,330	+		Sama_1884	0.24	+0.9
2,299,330	+		Sama_1884	0.24	-1.0
2,299,339	+		Sama_1884	0.25	+1.8
2,299,339	+		Sama_1884	0.25	+0.7
2,299,339	+		Sama_1884	0.25	-1.1
2,299,340	-		Sama_1884	0.25	+1.6
2,299,380	+		Sama_1884	0.31	-0.1
2,299,380	+		Sama_1884	0.31	-1.0
2,299,391	-		Sama_1884	0.32	-1.1
2,299,401	+		Sama_1884	0.33	+1.5
2,299,612	+		Sama_1884	0.60	-1.2
2,299,642	-		Sama_1884	0.64	-1.4
2,299,642	-		Sama_1884	0.64	-0.8
2,299,656	+		Sama_1884	0.66	-0.2
2,299,656	+		Sama_1884	0.66	+1.3
2,299,656	+		Sama_1884	0.66	+0.2
2,299,657	-		Sama_1884	0.66	-2.3
2,299,657	-		Sama_1884	0.66	+0.4
2,299,658	+		Sama_1884	0.66	-1.4
2,299,658	+		Sama_1884	0.66	-0.5
2,299,658	+		Sama_1884	0.66	-0.4
2,299,658	+		Sama_1884	0.66	+0.1
2,299,658	+		Sama_1884	0.66	+1.3
2,299,658	+		Sama_1884	0.66	+1.8
2,299,658	+		Sama_1884	0.66	+0.7
2,299,719	+		Sama_1884	0.74	+1.2
2,299,720	-		Sama_1884	0.74	+0.4
2,299,720	-		Sama_1884	0.74	+1.0
2,299,720	-		Sama_1884	0.74	-1.8
2,299,725	-		Sama_1884	0.75	-0.1
2,299,741	+		Sama_1884	0.77	-0.1
2,299,741	+		Sama_1884	0.77	+1.7
2,299,814	-		Sama_1884	0.86	-2.6
2,299,818	-		Sama_1884	0.87	+1.0
2,299,932	+				+0.9
2,299,933	-				-0.8
2,299,950	+				-1.8