Strain Fitness in Shewanella amazonensis SB2B around Sama_1855

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,258,309	+		Sama_1853	0.65	-0.3
2,258,310	-		Sama_1853	0.65	+0.9
2,258,310	-		Sama_1853	0.65	+0.8
2,258,346	-		Sama_1853	0.67	+1.2
2,258,346	-		Sama_1853	0.67	-0.3
2,258,456	+		Sama_1853	0.73	+0.8
2,258,634	+		Sama_1853	0.83	-0.2
2,258,634	+		Sama_1853	0.83	+1.3
2,258,635	-		Sama_1853	0.83	-0.4
2,258,638	-		Sama_1853	0.83	+0.4
2,258,667	+		Sama_1853	0.85	+0.1
2,258,668	-		Sama_1853	0.85	-0.3
2,258,811	+				+0.2
2,258,812	-				-1.6
2,258,940	+				+1.0
2,258,941	-				+1.0
2,258,954	+				-0.6
2,258,954	+				-0.4
2,258,954	+				+0.5
2,258,954	+				+0.1
2,258,955	-				-1.8
2,258,955	-				+1.0
2,258,955	-				+0.1
2,258,955	-				+0.5
2,258,955	-				+0.0
2,259,053	-		Sama_1854	0.45	-1.0
2,259,206	-				+0.6
2,259,206	-				-0.5
2,259,283	-				+0.6
2,259,307	-				-0.4
2,259,340	+				-0.4
2,259,340	+				-1.2
2,259,340	+				+0.2
2,259,341	-				+0.2
2,259,432	+	thiH	Sama_1855	0.11	-0.3
2,259,448	+	thiH	Sama_1855	0.13	-2.3
2,259,448	+	thiH	Sama_1855	0.13	+0.8
2,259,448	+	thiH	Sama_1855	0.13	-0.6
2,259,448	+	thiH	Sama_1855	0.13	-0.8
2,259,448	+	thiH	Sama_1855	0.13	-0.6
2,259,449	-	thiH	Sama_1855	0.13	-0.2
2,259,449	-	thiH	Sama_1855	0.13	-1.2
2,259,449	-	thiH	Sama_1855	0.13	-0.2
2,259,449	-	thiH	Sama_1855	0.13	+1.8
2,259,449	-	thiH	Sama_1855	0.13	-0.1
2,259,568	+	thiH	Sama_1855	0.24	+0.7
2,259,568	+	thiH	Sama_1855	0.24	+0.7
2,259,569	-	thiH	Sama_1855	0.24	+1.2
2,259,569	-	thiH	Sama_1855	0.24	-0.5
2,259,569	-	thiH	Sama_1855	0.24	-0.3
2,259,569	-	thiH	Sama_1855	0.24	+0.4
2,259,569	-	thiH	Sama_1855	0.24	+0.4
2,259,587	-	thiH	Sama_1855	0.25	-0.6
2,259,649	+	thiH	Sama_1855	0.31	-0.8
2,259,649	+	thiH	Sama_1855	0.31	-1.4
2,259,684	+	thiH	Sama_1855	0.34	+0.8
2,259,793	+	thiH	Sama_1855	0.44	+0.0
2,259,809	-	thiH	Sama_1855	0.45	+3.2
2,259,847	-	thiH	Sama_1855	0.49	+1.0
2,259,847	-	thiH	Sama_1855	0.49	+0.2
2,259,847	-	thiH	Sama_1855	0.49	-3.0
2,259,847	-	thiH	Sama_1855	0.49	+0.1
2,259,862	-	thiH	Sama_1855	0.50	+0.3
2,259,955	-	thiH	Sama_1855	0.58	+1.2
2,259,988	+	thiH	Sama_1855	0.61	+0.1
2,260,051	-	thiH	Sama_1855	0.67	-0.2
2,260,085	-	thiH	Sama_1855	0.70	+0.4
2,260,115	-	thiH	Sama_1855	0.73	-1.4
2,260,143	+	thiH	Sama_1855	0.75	+0.6
2,260,176	+	thiH	Sama_1855	0.78	+1.2
2,260,176	+	thiH	Sama_1855	0.78	-0.8
2,260,176	+	thiH	Sama_1855	0.78	+0.8
2,260,177	-	thiH	Sama_1855	0.78	+0.1
2,260,177	-	thiH	Sama_1855	0.78	+0.1
2,260,188	+	thiH	Sama_1855	0.79	-0.6
2,260,188	+	thiH	Sama_1855	0.79	-0.3
2,260,188	+	thiH	Sama_1855	0.79	+0.8
2,260,189	-	thiH	Sama_1855	0.79	-1.8
2,260,189	-	thiH	Sama_1855	0.79	-1.6
2,260,192	+	thiH	Sama_1855	0.79	+0.7
2,260,192	+	thiH	Sama_1855	0.79	+1.0
2,260,192	+	thiH	Sama_1855	0.79	-0.7
2,260,193	-	thiH	Sama_1855	0.80	+1.8
2,260,217	-	thiH	Sama_1855	0.82	+0.4
2,260,257	+	thiH	Sama_1855	0.85	-1.6
2,260,353	+				-0.6
2,260,372	+				+0.6
2,260,372	+				-0.3
2,260,372	+				+1.6
2,260,408	-				+1.2
2,260,474	-				-3.1
2,260,621	-	thiG	Sama_1856	0.25	-0.6
2,260,623	+	thiG	Sama_1856	0.25	-0.6
2,260,768	+	thiG	Sama_1856	0.43	+1.5
2,260,847	+	thiG	Sama_1856	0.53	+1.5
2,260,847	+	thiG	Sama_1856	0.53	-0.4
2,260,847	+	thiG	Sama_1856	0.53	-0.4
2,260,848	-	thiG	Sama_1856	0.53	+0.3
2,260,848	-	thiG	Sama_1856	0.53	+1.0
2,260,848	-	thiG	Sama_1856	0.53	-1.3
2,260,848	-	thiG	Sama_1856	0.53	-0.4
2,260,848	-	thiG	Sama_1856	0.53	-1.8
2,260,848	-	thiG	Sama_1856	0.53	+0.8
2,260,848	-	thiG	Sama_1856	0.53	-0.3
2,260,848	-	thiG	Sama_1856	0.53	+0.4
2,260,855	+	thiG	Sama_1856	0.54	+0.7
2,260,856	-	thiG	Sama_1856	0.54	-0.1
2,260,856	-	thiG	Sama_1856	0.54	+0.7
2,260,861	-	thiG	Sama_1856	0.54	+0.2
2,260,861	-	thiG	Sama_1856	0.54	-0.4
2,260,861	-	thiG	Sama_1856	0.54	+0.7
2,260,922	+	thiG	Sama_1856	0.62	-0.4
2,260,923	-	thiG	Sama_1856	0.62	+1.0
2,261,164	-				+0.6
2,261,281	+		Sama_1857	0.23	-1.6
2,261,290	+		Sama_1857	0.27	+0.0
2,261,291	-		Sama_1857	0.28	+0.0
2,261,291	-		Sama_1857	0.28	+0.6
2,261,291	-		Sama_1857	0.28	+1.1
2,261,291	-		Sama_1857	0.28	-1.6
2,261,302	+		Sama_1857	0.33	+1.2
2,261,303	-		Sama_1857	0.34	-0.4
2,261,315	+		Sama_1857	0.40	+0.7
2,261,315	+		Sama_1857	0.40	-0.1
2,261,316	-		Sama_1857	0.40	-0.4
2,261,316	-		Sama_1857	0.40	-1.8
2,261,316	-		Sama_1857	0.40	-1.3
2,261,369	-		Sama_1857	0.66	+0.8