Strain Fitness in Shewanella amazonensis SB2B around Sama_1815

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,209,101	-		Sama_1814	0.49	-0.9
2,209,642	+		Sama_1814	0.87	-1.7
2,209,674	+		Sama_1814	0.89	-1.2
2,209,675	-		Sama_1814	0.89	-1.2
2,209,752	+				-1.2
2,209,797	+				-2.0
2,209,814	+				-0.3
2,209,814	+				-2.3
2,209,819	-				-1.7
2,209,819	-				-1.4
2,209,869	+				+0.7
2,209,889	+				-0.6
2,209,889	+				-0.9
2,209,890	-				+0.8
2,209,890	-				-0.9
2,210,024	-				-1.0
2,210,024	-				-0.1
2,210,024	-				+0.1
2,210,024	-				+0.5
2,210,024	-				+1.4
2,210,024	-				+0.6
2,210,105	-				-0.9
2,210,222	+				-0.8
2,210,223	-				-1.8
2,210,225	-				-1.7
2,210,229	+				-3.0
2,210,230	-				+0.6
2,210,230	-				-0.2
2,210,230	-				-1.4
2,210,230	-				-0.7
2,210,230	-				-0.2
2,210,230	-				-0.8
2,210,241	-				-2.0
2,210,435	-		Sama_1815	0.17	-2.7
2,210,435	-		Sama_1815	0.17	-0.8
2,210,510	+		Sama_1815	0.20	-2.2
2,210,511	-		Sama_1815	0.20	-0.6
2,210,511	-		Sama_1815	0.20	-1.1
2,210,511	-		Sama_1815	0.20	-1.4
2,210,511	-		Sama_1815	0.20	-1.7
2,210,511	-		Sama_1815	0.20	-1.4
2,210,516	-		Sama_1815	0.21	-2.7
2,210,516	-		Sama_1815	0.21	-0.2
2,210,569	-		Sama_1815	0.23	-2.3
2,210,582	+		Sama_1815	0.24	-2.0
2,210,583	-		Sama_1815	0.24	+0.2
2,210,583	-		Sama_1815	0.24	-0.9
2,210,665	-		Sama_1815	0.27	-1.4
2,210,704	-		Sama_1815	0.29	-0.3
2,210,704	-		Sama_1815	0.29	-2.4
2,210,704	-		Sama_1815	0.29	-0.8
2,210,704	-		Sama_1815	0.29	+1.9
2,210,704	-		Sama_1815	0.29	-1.7
2,210,704	-		Sama_1815	0.29	-2.2
2,210,712	-		Sama_1815	0.29	-0.4
2,210,715	-		Sama_1815	0.29	-1.0
2,210,854	+		Sama_1815	0.36	-0.4
2,210,854	+		Sama_1815	0.36	-0.8
2,210,855	-		Sama_1815	0.36	-0.6
2,210,855	-		Sama_1815	0.36	-0.2
2,210,855	-		Sama_1815	0.36	-2.0
2,210,855	-		Sama_1815	0.36	-0.6
2,210,894	+		Sama_1815	0.37	-1.2
2,210,895	-		Sama_1815	0.37	-2.8
2,210,895	-		Sama_1815	0.37	-2.0
2,210,895	-		Sama_1815	0.37	-1.7
2,210,895	-		Sama_1815	0.37	-2.2
2,210,911	-		Sama_1815	0.38	-1.4
2,210,990	+		Sama_1815	0.41	-0.6
2,210,991	-		Sama_1815	0.42	-1.3
2,210,991	-		Sama_1815	0.42	+0.4
2,210,991	-		Sama_1815	0.42	-0.4
2,211,006	-		Sama_1815	0.42	-1.4
2,211,006	-		Sama_1815	0.42	-1.9
2,211,087	+		Sama_1815	0.46	-0.6
2,211,088	-		Sama_1815	0.46	-0.8
2,211,088	-		Sama_1815	0.46	-0.4
2,211,088	-		Sama_1815	0.46	-0.7
2,211,093	-		Sama_1815	0.46	-1.1
2,211,093	-		Sama_1815	0.46	+0.3
2,211,093	-		Sama_1815	0.46	-1.2
2,211,093	-		Sama_1815	0.46	-1.4
2,211,093	-		Sama_1815	0.46	-0.7
2,211,125	-		Sama_1815	0.47	-0.8
2,211,152	-		Sama_1815	0.49	-0.8
2,211,176	+		Sama_1815	0.50	+0.0
2,211,177	-		Sama_1815	0.50	+0.7
2,211,183	+		Sama_1815	0.50	-0.3
2,211,184	-		Sama_1815	0.50	-1.8
2,211,184	-		Sama_1815	0.50	-2.3
2,211,187	+		Sama_1815	0.50	-0.4
2,211,188	-		Sama_1815	0.50	-0.0
2,211,188	-		Sama_1815	0.50	-0.7
2,211,188	-		Sama_1815	0.50	+0.3
2,211,188	-		Sama_1815	0.50	-2.0
2,211,188	-		Sama_1815	0.50	-0.4
2,211,188	-		Sama_1815	0.50	-0.6
2,211,258	-		Sama_1815	0.53	-1.4
2,211,258	-		Sama_1815	0.53	-1.0
2,211,258	-		Sama_1815	0.53	-0.2
2,211,262	-		Sama_1815	0.53	-1.0
2,211,262	-		Sama_1815	0.53	+0.2
2,211,262	-		Sama_1815	0.53	-1.2
2,211,262	-		Sama_1815	0.53	-0.2
2,211,262	-		Sama_1815	0.53	-3.1
2,211,262	-		Sama_1815	0.53	-0.7
2,211,262	-		Sama_1815	0.53	-2.2
2,211,263	+		Sama_1815	0.53	-1.2
2,211,264	-		Sama_1815	0.54	-1.8
2,211,358	-		Sama_1815	0.58	-0.8
2,211,358	-		Sama_1815	0.58	-2.0
2,211,416	-		Sama_1815	0.60	-1.0
2,211,416	-		Sama_1815	0.60	-0.2
2,211,433	-		Sama_1815	0.61	+0.2
2,211,433	-		Sama_1815	0.61	-1.7
2,211,445	-		Sama_1815	0.61	-0.8
2,211,508	-		Sama_1815	0.64	-1.8
2,211,520	-		Sama_1815	0.65	+0.5
2,211,538	-		Sama_1815	0.66	-1.1
2,211,612	+		Sama_1815	0.69	-2.4
2,211,613	-		Sama_1815	0.69	-0.4
2,211,613	-		Sama_1815	0.69	-0.8
2,211,613	-		Sama_1815	0.69	-0.4
2,211,614	+		Sama_1815	0.69	-0.4
2,211,614	+		Sama_1815	0.69	-0.2
2,211,615	-		Sama_1815	0.69	-1.0
2,211,661	-		Sama_1815	0.71	-1.4
2,211,804	-		Sama_1815	0.77	-0.8
2,211,804	-		Sama_1815	0.77	-2.2
2,211,909	-		Sama_1815	0.82	-1.1
2,212,055	-		Sama_1815	0.88	-0.8
2,212,145	-				-1.7
2,212,286	-				-1.4
2,212,286	-				-2.4
2,212,331	-				-0.9
2,212,331	-				-1.9
2,212,331	-				-0.7
2,212,339	+				-2.8
2,212,378	+				+0.3
2,212,379	-				-1.2
2,212,379	-				-0.4
2,212,379	-				+0.4
2,212,408	-		Sama_1816	0.10	-0.9
2,212,408	-		Sama_1816	0.10	-2.5
2,212,408	-		Sama_1816	0.10	+1.4
2,212,408	-		Sama_1816	0.10	+0.4
2,212,408	-		Sama_1816	0.10	-2.1
2,212,593	-		Sama_1816	0.37	-1.2
2,212,593	-		Sama_1816	0.37	-1.2
2,212,596	-		Sama_1816	0.38	-0.8
2,212,596	-		Sama_1816	0.38	-1.7
2,212,596	-		Sama_1816	0.38	-2.4
2,212,626	-		Sama_1816	0.42	-1.0
2,212,626	-		Sama_1816	0.42	+0.5
2,212,626	-		Sama_1816	0.42	+1.2
2,212,626	-		Sama_1816	0.42	-0.2
2,212,628	-		Sama_1816	0.42	+0.2
2,212,628	-		Sama_1816	0.42	-2.5
2,212,642	-		Sama_1816	0.44	-2.1
2,212,642	-		Sama_1816	0.44	-0.4
2,212,683	-		Sama_1816	0.50	+0.6
2,212,683	-		Sama_1816	0.50	+0.0
2,212,683	-		Sama_1816	0.50	-0.8
2,212,785	-		Sama_1816	0.65	-0.4
2,212,799	-		Sama_1816	0.67	+0.0
2,212,878	-		Sama_1816	0.79	-2.2
2,212,990	-				-0.8
2,212,990	-				-1.0
2,212,990	-				-0.8
2,213,078	+				-0.7
2,213,094	+				-0.1
2,213,094	+				+0.5
2,213,097	+				-0.5
2,213,139	-				-1.2
2,213,223	+				-0.2
2,213,278	+				+0.2
2,213,278	+				+0.3
2,213,279	-				-0.4
2,213,282	-				+2.5
2,213,299	+				+0.6
2,213,300	-				+1.7
2,213,315	-				+0.1
2,213,315	-				+2.2
2,213,319	+				-3.4
2,213,320	-				+0.6
2,213,320	-				+0.3