Strain Fitness in Shewanella amazonensis SB2B around Sama_1814

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,207,587	+		Sama_1813	0.28	+2.2
2,207,587	+		Sama_1813	0.28	+0.7
2,207,588	-		Sama_1813	0.28	+1.5
2,207,814	-		Sama_1813	0.54	-0.4
2,207,868	+		Sama_1813	0.61	+1.0
2,207,869	-		Sama_1813	0.61	-0.2
2,208,039	+		Sama_1813	0.81	+2.6
2,208,045	+		Sama_1813	0.81	+1.9
2,208,045	+		Sama_1813	0.81	+1.5
2,208,046	-		Sama_1813	0.81	+1.6
2,208,046	-		Sama_1813	0.81	+0.7
2,208,046	-		Sama_1813	0.81	-0.6
2,208,049	+		Sama_1813	0.82	+1.3
2,208,095	+		Sama_1813	0.87	+0.1
2,208,111	+		Sama_1813	0.89	+2.6
2,208,186	+				-0.6
2,208,203	-				-1.2
2,208,254	+				+0.6
2,208,255	-				-2.7
2,208,351	+				-1.9
2,208,351	+				-1.2
2,208,353	+				+2.6
2,208,477	+				-2.2
2,208,482	+				-1.9
2,208,624	+		Sama_1814	0.16	-1.2
2,208,653	+		Sama_1814	0.18	-1.4
2,208,713	+		Sama_1814	0.22	-1.9
2,208,717	+		Sama_1814	0.23	-2.9
2,208,724	+		Sama_1814	0.23	-1.9
2,208,726	+		Sama_1814	0.23	-2.6
2,208,726	+		Sama_1814	0.23	-1.7
2,208,727	-		Sama_1814	0.23	-0.9
2,209,000	+		Sama_1814	0.42	-1.4
2,209,000	+		Sama_1814	0.42	-2.2
2,209,000	+		Sama_1814	0.42	-2.3
2,209,101	-		Sama_1814	0.49	-0.9
2,209,642	+		Sama_1814	0.87	-1.7
2,209,674	+		Sama_1814	0.89	-1.2
2,209,675	-		Sama_1814	0.89	-1.2
2,209,752	+				-1.2
2,209,797	+				-2.0
2,209,814	+				-0.3
2,209,814	+				-2.3
2,209,819	-				-1.7
2,209,819	-				-1.4
2,209,869	+				+0.7
2,209,889	+				-0.6
2,209,889	+				-0.9
2,209,890	-				+0.8
2,209,890	-				-0.9
2,210,024	-				-1.0
2,210,024	-				-0.1
2,210,024	-				+0.1
2,210,024	-				+0.5
2,210,024	-				+1.4
2,210,024	-				+0.6
2,210,105	-				-0.9
2,210,222	+				-0.8
2,210,223	-				-1.8
2,210,225	-				-1.7
2,210,229	+				-3.0
2,210,230	-				+0.6
2,210,230	-				-0.2
2,210,230	-				-1.4
2,210,230	-				-0.7
2,210,230	-				-0.2
2,210,230	-				-0.8
2,210,241	-				-2.0
2,210,435	-		Sama_1815	0.17	-2.7
2,210,435	-		Sama_1815	0.17	-0.8
2,210,510	+		Sama_1815	0.20	-2.2
2,210,511	-		Sama_1815	0.20	-0.6
2,210,511	-		Sama_1815	0.20	-1.1
2,210,511	-		Sama_1815	0.20	-1.4
2,210,511	-		Sama_1815	0.20	-1.7
2,210,511	-		Sama_1815	0.20	-1.4
2,210,516	-		Sama_1815	0.21	-2.7
2,210,516	-		Sama_1815	0.21	-0.2
2,210,569	-		Sama_1815	0.23	-2.3
2,210,582	+		Sama_1815	0.24	-2.0
2,210,583	-		Sama_1815	0.24	+0.2
2,210,583	-		Sama_1815	0.24	-0.9
2,210,665	-		Sama_1815	0.27	-1.4
2,210,704	-		Sama_1815	0.29	-0.3
2,210,704	-		Sama_1815	0.29	-2.4
2,210,704	-		Sama_1815	0.29	-0.8
2,210,704	-		Sama_1815	0.29	+1.9
2,210,704	-		Sama_1815	0.29	-1.7
2,210,704	-		Sama_1815	0.29	-2.2
2,210,712	-		Sama_1815	0.29	-0.4
2,210,715	-		Sama_1815	0.29	-1.0