Strain Fitness in Shewanella amazonensis SB2B around Sama_1791

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,182,993	-		Sama_1789	0.86	+0.1
2,182,998	+		Sama_1789	0.87	-0.0
2,183,002	+		Sama_1789	0.87	-0.1
2,183,012	+		Sama_1789	0.87	+0.4
2,183,012	+		Sama_1789	0.87	+0.6
2,183,013	-		Sama_1789	0.88	-2.3
2,183,013	-		Sama_1789	0.88	+0.7
2,183,013	-		Sama_1789	0.88	-0.9
2,183,133	-				+0.5
2,183,133	-				-0.7
2,183,276	+		Sama_1790	0.14	-0.7
2,183,277	-		Sama_1790	0.15	-1.9
2,183,277	-		Sama_1790	0.15	-2.1
2,183,277	-		Sama_1790	0.15	-2.0
2,183,297	+		Sama_1790	0.19	-1.5
2,183,297	+		Sama_1790	0.19	-2.6
2,183,297	+		Sama_1790	0.19	+0.4
2,183,298	-		Sama_1790	0.19	-2.3
2,183,298	-		Sama_1790	0.19	-2.0
2,183,298	-		Sama_1790	0.19	-1.5
2,183,298	-		Sama_1790	0.19	-1.2
2,183,298	-		Sama_1790	0.19	-3.7
2,183,298	-		Sama_1790	0.19	-1.5
2,183,299	+		Sama_1790	0.19	-2.0
2,183,299	+		Sama_1790	0.19	-2.6
2,183,299	+		Sama_1790	0.19	-2.5
2,183,300	-		Sama_1790	0.20	-3.0
2,183,300	-		Sama_1790	0.20	-2.5
2,183,300	-		Sama_1790	0.20	-2.6
2,183,300	-		Sama_1790	0.20	+0.1
2,183,442	+		Sama_1790	0.51	-1.5
2,183,443	-		Sama_1790	0.51	-2.7
2,183,494	-		Sama_1790	0.62	-2.3
2,183,658	+				-2.3
2,183,666	+				-1.9
2,183,667	-				-0.2
2,183,677	-				-0.5
2,183,744	+				+0.3
2,183,768	-				-2.6
2,183,896	+				-0.7
2,183,896	+				+0.1
2,183,896	+				-1.3
2,183,896	+				-2.2
2,183,897	-				-2.2
2,183,897	-				-1.5
2,183,897	-				+1.1
2,183,908	+				-2.0
2,183,911	+				-2.2
2,183,912	-				-1.3
2,183,912	-				-3.2
2,183,927	+				-3.0
2,183,927	+				-0.5
2,183,927	+				-2.3
2,183,928	-				-2.7
2,183,928	-				-2.8
2,183,961	+				-1.7
2,183,961	+				-2.7
2,183,962	-				-2.2
2,183,967	+				-2.2
2,183,967	+				-2.6
2,183,967	+				-1.7
2,184,021	-				-0.7
2,184,052	+				-2.0
2,184,168	+		Sama_1791	0.17	-1.6
2,184,168	+		Sama_1791	0.17	-2.5
2,184,168	+		Sama_1791	0.17	-2.6
2,184,169	-		Sama_1791	0.17	-1.2
2,184,169	-		Sama_1791	0.17	-1.6
2,184,169	-		Sama_1791	0.17	-2.2
2,184,169	-		Sama_1791	0.17	-2.9
2,184,171	+		Sama_1791	0.17	-1.0
2,184,171	+		Sama_1791	0.17	-2.9
2,184,171	+		Sama_1791	0.17	-1.9
2,184,172	-		Sama_1791	0.17	-2.9
2,184,172	-		Sama_1791	0.17	-1.7
2,184,172	-		Sama_1791	0.17	-1.9
2,184,172	-		Sama_1791	0.17	-1.9
2,184,185	+		Sama_1791	0.18	-1.9
2,184,186	-		Sama_1791	0.18	-1.8
2,184,186	-		Sama_1791	0.18	+0.1
2,184,186	-		Sama_1791	0.18	-0.5
2,184,248	+		Sama_1791	0.22	-1.1
2,184,248	+		Sama_1791	0.22	-1.5
2,184,249	-		Sama_1791	0.22	-2.2
2,184,287	+		Sama_1791	0.25	-2.6
2,184,288	-		Sama_1791	0.25	-1.5
2,184,304	-		Sama_1791	0.26	-1.5
2,184,347	-		Sama_1791	0.29	-2.2
2,184,358	-		Sama_1791	0.30	-3.1
2,184,377	+		Sama_1791	0.31	-0.2
2,184,381	-		Sama_1791	0.32	-1.5
2,184,408	+		Sama_1791	0.33	-1.7
2,184,408	+		Sama_1791	0.33	-2.7
2,184,449	-		Sama_1791	0.36	-2.3
2,184,449	-		Sama_1791	0.36	-1.2
2,184,467	-		Sama_1791	0.38	-1.5
2,184,467	-		Sama_1791	0.38	-1.9
2,184,488	+		Sama_1791	0.39	-1.5
2,184,513	+		Sama_1791	0.41	-1.5
2,184,526	+		Sama_1791	0.42	-1.5
2,184,533	+		Sama_1791	0.42	-2.2
2,184,533	+		Sama_1791	0.42	-2.2
2,184,533	+		Sama_1791	0.42	-2.3
2,184,533	+		Sama_1791	0.42	-0.9
2,184,534	-		Sama_1791	0.42	-2.5
2,184,534	-		Sama_1791	0.42	-0.5
2,184,549	+		Sama_1791	0.43	-2.0
2,184,604	-		Sama_1791	0.47	+0.1
2,184,604	-		Sama_1791	0.47	-1.2
2,184,604	-		Sama_1791	0.47	-0.9
2,184,604	-		Sama_1791	0.47	-1.5
2,184,606	+		Sama_1791	0.47	-1.3
2,184,606	+		Sama_1791	0.47	-3.0
2,184,607	-		Sama_1791	0.47	-0.5
2,184,639	+		Sama_1791	0.49	-0.9
2,184,646	-		Sama_1791	0.50	-0.6
2,184,687	+		Sama_1791	0.53	-2.0
2,184,687	+		Sama_1791	0.53	-1.5
2,184,688	-		Sama_1791	0.53	-0.2
2,184,688	-		Sama_1791	0.53	-1.2
2,184,688	-		Sama_1791	0.53	-3.3
2,184,717	+		Sama_1791	0.55	-2.0
2,184,753	-		Sama_1791	0.57	-0.9
2,184,806	+		Sama_1791	0.61	-0.9
2,184,807	-		Sama_1791	0.61	-3.0
2,184,871	+		Sama_1791	0.66	-1.2
2,184,872	-		Sama_1791	0.66	-1.5
2,184,886	-		Sama_1791	0.67	-2.3
2,184,911	+		Sama_1791	0.68	-1.5
2,184,911	+		Sama_1791	0.68	-1.2
2,184,912	-		Sama_1791	0.68	-1.9
2,184,912	-		Sama_1791	0.68	-1.7
2,184,912	-		Sama_1791	0.68	+0.1
2,184,912	-		Sama_1791	0.68	-1.2
2,184,912	-		Sama_1791	0.68	-1.7
2,184,948	+		Sama_1791	0.71	-2.0
2,184,973	+		Sama_1791	0.73	-1.5
2,184,973	+		Sama_1791	0.73	-0.3
2,184,973	+		Sama_1791	0.73	-0.2
2,184,974	-		Sama_1791	0.73	-1.5
2,185,010	+		Sama_1791	0.75	-0.9
2,185,011	-		Sama_1791	0.75	-1.9
2,185,023	+		Sama_1791	0.76	-2.6
2,185,037	+		Sama_1791	0.77	-3.0
2,185,062	+		Sama_1791	0.79	-2.5
2,185,063	-		Sama_1791	0.79	-2.0
2,185,068	-		Sama_1791	0.79	-2.5
2,185,079	-		Sama_1791	0.80	-2.0
2,185,084	+		Sama_1791	0.80	-1.5
2,185,084	+		Sama_1791	0.80	-1.3
2,185,120	-		Sama_1791	0.83	-1.5
2,185,147	+		Sama_1791	0.85	-0.5
2,185,148	-		Sama_1791	0.85	-1.2
2,185,197	+		Sama_1791	0.88	-2.0
2,185,198	-		Sama_1791	0.88	-1.5
2,185,207	+		Sama_1791	0.89	-2.2
2,185,207	+		Sama_1791	0.89	-1.5
2,185,237	-				-1.7
2,185,243	+				-1.2
2,185,293	+				-1.2
2,185,293	+				-1.7
2,185,294	-				-3.0
2,185,294	-				-1.9
2,185,294	-				+4.4
2,185,396	+				-1.6
2,185,493	+		Sama_1792	0.19	-1.0
2,185,494	-		Sama_1792	0.19	-1.5
2,185,507	+		Sama_1792	0.21	-1.9
2,185,524	+		Sama_1792	0.24	-2.0
2,185,524	+		Sama_1792	0.24	-1.8
2,185,557	+		Sama_1792	0.30	-2.7
2,185,557	+		Sama_1792	0.30	-2.1
2,185,557	+		Sama_1792	0.30	-2.9
2,185,557	+		Sama_1792	0.30	-2.9
2,185,557	+		Sama_1792	0.30	-3.0
2,185,558	-		Sama_1792	0.30	-0.5
2,185,558	-		Sama_1792	0.30	-2.9
2,185,558	-		Sama_1792	0.30	-1.7
2,185,558	-		Sama_1792	0.30	-2.6
2,185,575	+		Sama_1792	0.33	-2.0
2,185,575	+		Sama_1792	0.33	-1.7
2,185,657	+		Sama_1792	0.46	-0.5
2,185,915	+		Sama_1792	0.89	-0.4
2,185,980	+				-0.8
2,185,981	-				-2.2
2,185,992	+				-0.7
2,185,992	+				-0.2
2,185,992	+				-2.5
2,185,992	+				-1.2
2,185,992	+				-2.3
2,185,992	+				-2.6
2,185,993	-				-2.3
2,185,993	-				-2.6
2,185,993	-				-2.3
2,185,993	-				-3.4
2,185,995	-				-1.7
2,186,002	-				-1.7
2,186,011	+				-2.0
2,186,011	+				-1.7
2,186,011	+				-1.4
2,186,023	+		Sama_1793	0.16	-3.6
2,186,024	-		Sama_1793	0.17	-3.0
2,186,035	+		Sama_1793	0.23	-1.5
2,186,035	+		Sama_1793	0.23	-0.9
2,186,054	+		Sama_1793	0.34	-2.4
2,186,057	-		Sama_1793	0.36	-2.6
2,186,057	-		Sama_1793	0.36	-0.4
2,186,070	+		Sama_1793	0.43	-3.4
2,186,071	-		Sama_1793	0.44	-0.4
2,186,072	+		Sama_1793	0.44	-1.4
2,186,073	-		Sama_1793	0.45	-2.0
2,186,073	-		Sama_1793	0.45	-1.4
2,186,167	-				-1.9
2,186,192	-				-2.2
2,186,200	+				-2.3
2,186,201	-				-2.0
2,186,205	+				-2.2
2,186,226	+				-3.0
2,186,226	+				-3.4
2,186,226	+				-2.0
2,186,227	-				-0.7
2,186,275	+		Sama_1794	0.11	-3.1
2,186,276	-		Sama_1794	0.11	-2.0
2,186,278	+		Sama_1794	0.11	-2.2
2,186,330	-		Sama_1794	0.17	-1.8
2,186,341	+		Sama_1794	0.18	-1.9
2,186,341	+		Sama_1794	0.18	-1.4
2,186,341	+		Sama_1794	0.18	-3.0
2,186,341	+		Sama_1794	0.18	-3.5
2,186,341	+		Sama_1794	0.18	-2.6
2,186,341	+		Sama_1794	0.18	-1.7
2,186,354	+		Sama_1794	0.19	-0.9
2,186,355	-		Sama_1794	0.19	-1.7
2,186,363	+		Sama_1794	0.20	-1.4
2,186,363	+		Sama_1794	0.20	-1.2
2,186,363	+		Sama_1794	0.20	-1.7
2,186,364	-		Sama_1794	0.20	-2.6
2,186,364	-		Sama_1794	0.20	-0.4