Strain Fitness in Shewanella amazonensis SB2B around Sama_1788

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,180,183	+				-0.2
2,180,210	+				-1.7
2,180,215	-				-0.1
2,180,235	-				-1.6
2,180,285	-				-0.2
2,180,303	-				+1.0
2,180,320	+				-0.0
2,180,335	-				-1.2
2,180,335	-				+0.3
2,180,349	+				-0.8
2,180,390	+		Sama_1787	0.22	+0.5
2,180,391	-		Sama_1787	0.22	-0.7
2,180,391	-		Sama_1787	0.22	+1.1
2,180,405	+		Sama_1787	0.28	-0.0
2,180,405	+		Sama_1787	0.28	-1.5
2,180,457	-		Sama_1787	0.50	-0.6
2,180,568	+				+1.3
2,180,568	+				-0.7
2,180,568	+				-1.0
2,180,568	+				+0.6
2,180,569	-				+1.1
2,180,569	-				-0.5
2,180,578	+				-0.3
2,180,578	+				-1.8
2,180,578	+				-0.5
2,180,579	-				+1.9
2,180,579	-				-0.5
2,180,579	-				-2.0
2,180,579	-				-0.9
2,180,600	+				+0.0
2,180,601	-				-0.6
2,180,660	-				+0.1
2,180,660	-				-0.8
2,180,663	+				+1.4
2,180,665	+				-1.7
2,180,666	-				+0.8
2,180,666	-				-0.9
2,180,673	+				+0.8
2,180,686	-				-0.9
2,180,736	+				-0.2
2,180,788	+				-1.9
2,180,789	-				+0.6
2,180,807	+				+2.7
2,180,807	+				+0.5
2,180,808	-				-0.3
2,180,810	+				-1.2
2,180,831	+				+0.7
2,180,832	-				-0.1
2,180,834	-				+0.5
2,180,852	+				+1.1
2,180,853	-				-2.3
2,180,883	+				-0.2
2,180,990	+				+0.6
2,180,991	-				-2.6
2,180,995	-				-1.7
2,181,005	+				+0.5
2,181,028	-				-1.1
2,181,042	+				+0.1
2,181,085	+				+1.4
2,181,155	+				+0.8
2,181,202	-		Sama_1788	0.17	+0.7
2,181,248	+		Sama_1788	0.31	-1.2
2,181,249	-		Sama_1788	0.31	+0.9
2,181,321	-		Sama_1788	0.53	-1.7
2,181,327	+		Sama_1788	0.55	-1.5
2,181,338	+		Sama_1788	0.58	-1.4
2,181,396	+		Sama_1788	0.75	-1.1
2,181,397	-		Sama_1788	0.76	-1.3
2,181,469	+				+1.6
2,181,469	+				-1.5
2,181,470	-				-1.0
2,181,494	-				+0.3
2,181,494	-				+0.7
2,181,527	-				+0.8
2,181,567	-				+0.5
2,181,567	-				+0.6
2,181,567	-				+1.1
2,181,585	-				-0.0
2,181,884	+		Sama_1789	0.16	+1.7
2,181,884	+		Sama_1789	0.16	-0.3
2,181,885	-		Sama_1789	0.16	+0.1
2,181,885	-		Sama_1789	0.16	+0.7
2,181,921	-		Sama_1789	0.18	-0.5
2,181,942	+		Sama_1789	0.20	+0.1
2,181,943	-		Sama_1789	0.20	+0.1
2,181,962	+		Sama_1789	0.21	-2.2
2,181,963	-		Sama_1789	0.21	+0.7
2,181,963	-		Sama_1789	0.21	+0.8
2,181,963	-		Sama_1789	0.21	-0.4
2,181,965	+		Sama_1789	0.21	+0.3
2,181,966	-		Sama_1789	0.21	-0.4
2,181,966	-		Sama_1789	0.21	+1.1
2,181,966	-		Sama_1789	0.21	+0.5
2,181,966	-		Sama_1789	0.21	+0.3
2,182,018	+		Sama_1789	0.24	+1.2
2,182,034	-		Sama_1789	0.25	-1.2
2,182,081	+		Sama_1789	0.28	+0.0
2,182,082	-		Sama_1789	0.28	-0.5
2,182,082	-		Sama_1789	0.28	-0.7
2,182,110	+		Sama_1789	0.30	-1.2
2,182,110	+		Sama_1789	0.30	-0.9
2,182,152	+		Sama_1789	0.33	-0.5
2,182,209	-		Sama_1789	0.37	-0.3
2,182,209	-		Sama_1789	0.37	-1.0
2,182,287	+		Sama_1789	0.41	+1.1
2,182,393	-		Sama_1789	0.48	-1.7
2,182,403	+		Sama_1789	0.49	+0.8
2,182,439	-		Sama_1789	0.51	-0.5