Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1776 and Sama_1777 are separated by 27 nucleotides Sama_1777 and Sama_1778 are separated by 56 nucleotides Sama_1778 and Sama_1779 overlap by 7 nucleotides Sama_1779 and Sama_1780 overlap by 1 nucleotides
Sama_1776: Sama_1776 - seryl-tRNA synthetase (RefSeq), at 2,171,156 to 2,172,442
_1776
Sama_1777: Sama_1777 - hypothetical protein (RefSeq), at 2,172,470 to 2,172,589
_1777
Sama_1778: Sama_1778 - DsrC-like protein (RefSeq), at 2,172,646 to 2,172,984
_1778
Sama_1779: Sama_1779 - putative uncharacterized protein involved in oxidation of intracellular sulfur (RefSeq), at 2,172,978 to 2,173,271
_1779
Sama_1780: Sama_1780 - putative uncharacterized protein involved in oxidation of intracellular sulfur (RefSeq), at 2,173,271 to 2,173,627
_1780
Position (kb)
2172
2173 Strain fitness (log2 ratio)
-2
-1
0
1 at 2172.443 kb on + strand at 2172.467 kb on + strand at 2172.467 kb on + strand at 2172.467 kb on + strand at 2172.469 kb on + strand at 2172.469 kb on + strand at 2172.492 kb on + strand, within Sama_1777 at 2172.506 kb on + strand, within Sama_1777 at 2172.506 kb on + strand, within Sama_1777 at 2172.547 kb on + strand, within Sama_1777 at 2172.547 kb on + strand, within Sama_1777 at 2172.580 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 2,172,443 + -1.2 2,172,467 + +0.1 2,172,467 + -1.7 2,172,467 + -1.2 2,172,469 + +0.5 2,172,469 + +0.1 2,172,492 + Sama_1777 0.18 -0.3 2,172,506 + Sama_1777 0.30 +0.6 2,172,506 + Sama_1777 0.30 +0.3 2,172,547 + Sama_1777 0.64 -2.5 2,172,547 + Sama_1777 0.64 -0.0 2,172,580 + +0.8
Or see this region's nucleotide sequence