Strain Fitness in Shewanella amazonensis SB2B around Sama_1757

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,147,091	-		Sama_1755	0.70	-0.6
2,147,132	+		Sama_1755	0.74	+0.0
2,147,132	+		Sama_1755	0.74	+0.6
2,147,330	+				+1.6
2,147,378	+				-0.2
2,147,438	-				+1.1
2,147,454	+				+0.7
2,147,455	-				+0.5
2,147,455	-				-1.9
2,147,612	+		Sama_1756	0.26	-1.9
2,147,612	+		Sama_1756	0.26	-1.5
2,147,613	-		Sama_1756	0.26	-0.5
2,147,613	-		Sama_1756	0.26	-0.9
2,147,624	-		Sama_1756	0.28	+0.8
2,147,666	+		Sama_1756	0.38	-0.9
2,147,666	+		Sama_1756	0.38	-1.2
2,147,870	+		Sama_1756	0.86	+0.0
2,147,929	-				-0.7
2,147,952	+				+0.5
2,147,952	+				-1.9
2,147,953	-				-0.1
2,147,990	+				-0.9
2,147,991	-				-0.3
2,148,034	+				+0.5
2,148,040	-				+0.7
2,148,060	+				+1.4
2,148,081	+				+0.5
2,148,082	-				+0.1
2,148,131	+				+0.8
2,148,131	+				-1.5
2,148,132	-				-2.6
2,148,244	+				-0.8
2,148,244	+				-1.7
2,148,247	-				-1.0
2,148,328	+		Sama_1757	0.12	+0.0
2,148,328	+		Sama_1757	0.12	+0.3
2,148,330	+		Sama_1757	0.12	+0.1
2,148,367	+		Sama_1757	0.14	-0.5
2,148,391	+		Sama_1757	0.15	+0.1
2,148,392	-		Sama_1757	0.15	+0.3
2,148,396	+		Sama_1757	0.15	-1.4
2,148,408	+		Sama_1757	0.16	-0.9
2,148,501	+		Sama_1757	0.20	-1.0
2,148,501	+		Sama_1757	0.20	-0.3
2,148,501	+		Sama_1757	0.20	-0.3
2,148,503	+		Sama_1757	0.20	-1.7
2,148,503	+		Sama_1757	0.20	+0.2
2,148,503	+		Sama_1757	0.20	+0.3
2,148,503	+		Sama_1757	0.20	+0.1
2,148,503	+		Sama_1757	0.20	-0.2
2,148,503	+		Sama_1757	0.20	+0.3
2,148,504	-		Sama_1757	0.20	-0.9
2,148,504	-		Sama_1757	0.20	-1.3
2,148,504	-		Sama_1757	0.20	-1.6
2,148,504	-		Sama_1757	0.20	-1.8
2,148,575	+		Sama_1757	0.24	+0.6
2,148,899	+		Sama_1757	0.39	+1.1
2,148,900	-		Sama_1757	0.39	-0.5
2,148,967	-		Sama_1757	0.43	-0.5
2,148,972	+		Sama_1757	0.43	+0.1
2,149,124	+		Sama_1757	0.50	-0.1
2,149,173	+		Sama_1757	0.52	-2.0
2,149,173	+		Sama_1757	0.52	-1.7
2,149,279	+		Sama_1757	0.58	+0.4
2,149,279	+		Sama_1757	0.58	-1.9
2,149,279	+		Sama_1757	0.58	-0.9
2,149,280	-		Sama_1757	0.58	+1.1
2,149,281	+		Sama_1757	0.58	-1.5
2,149,282	-		Sama_1757	0.58	+0.3
2,149,310	-		Sama_1757	0.59	-0.9
2,149,396	+		Sama_1757	0.63	+1.1
2,149,411	-		Sama_1757	0.64	+0.9
2,149,432	+		Sama_1757	0.65	+2.4
2,149,433	-		Sama_1757	0.65	+1.3
2,149,433	-		Sama_1757	0.65	+0.5
2,149,433	-		Sama_1757	0.65	-2.2
2,149,489	+		Sama_1757	0.68	-0.7
2,149,489	+		Sama_1757	0.68	+0.3
2,149,511	+		Sama_1757	0.69	-0.5
2,149,528	+		Sama_1757	0.69	-0.9
2,149,528	+		Sama_1757	0.69	-1.1
2,149,529	-		Sama_1757	0.69	+0.1
2,149,529	-		Sama_1757	0.69	-2.0
2,149,573	+		Sama_1757	0.72	-0.5
2,149,573	+		Sama_1757	0.72	-1.0
2,149,573	+		Sama_1757	0.72	+0.7
2,149,577	+		Sama_1757	0.72	-0.2
2,149,578	-		Sama_1757	0.72	+1.2
2,149,578	-		Sama_1757	0.72	+0.5
2,149,657	+		Sama_1757	0.76	-1.7
2,149,657	+		Sama_1757	0.76	-0.7
2,149,657	+		Sama_1757	0.76	+1.0
2,149,692	+		Sama_1757	0.77	+1.6
2,149,693	-		Sama_1757	0.77	-2.2
2,149,741	-		Sama_1757	0.80	-1.2
2,149,741	-		Sama_1757	0.80	-0.5
2,149,789	+		Sama_1757	0.82	+0.4
2,149,802	+		Sama_1757	0.83	-0.2
2,149,802	+		Sama_1757	0.83	+0.8
2,149,802	+		Sama_1757	0.83	-0.5
2,149,927	+		Sama_1757	0.89	+0.2
2,149,928	-		Sama_1757	0.89	-0.3
2,149,928	-		Sama_1757	0.89	-1.0
2,149,932	+		Sama_1757	0.89	+0.8
2,149,932	+		Sama_1757	0.89	-2.0
2,149,932	+		Sama_1757	0.89	-0.3
2,149,932	+		Sama_1757	0.89	+0.9
2,149,938	+		Sama_1757	0.89	+2.0
2,149,965	-				+0.8
2,150,060	-				+0.8
2,150,100	+				-0.0
2,150,100	+				+0.7
2,150,120	+				+1.7
2,150,121	-				+0.6
2,150,121	-				-0.5
2,150,124	+				+1.3
2,150,124	+				+1.5
2,150,134	+				+0.8
2,150,134	+				+1.3
2,150,140	+				+0.1
2,150,140	+				+0.8
2,150,140	+				+0.5
2,150,141	-				-1.9
2,150,141	-				+0.3
2,150,141	-				-0.1
2,150,144	+				+0.6
2,150,145	+				+1.7
2,150,145	-				-0.4
2,150,157	+				+1.2
2,150,157	+				+0.4
2,150,157	+				+0.7
2,150,164	+				+1.3
2,150,165	-				+0.5
2,150,250	-				-0.9
2,150,293	-				-0.2
2,150,298	+				+2.0
2,150,299	-				-0.2
2,150,407	+				-2.2
2,150,408	-				-1.7
2,150,408	-				-2.5
2,150,408	-				-1.7
2,150,463	-				-1.2
2,150,471	+				-1.9
2,150,472	-				-2.3
2,150,472	-				-0.5
2,150,478	-				-1.2
2,150,478	-				-1.8
2,150,523	+		Sama_1758	0.12	-0.0
2,150,523	+		Sama_1758	0.12	-1.9
2,150,523	+		Sama_1758	0.12	-0.8
2,150,527	+		Sama_1758	0.12	+0.4
2,150,528	-		Sama_1758	0.12	-0.6
2,150,534	+		Sama_1758	0.12	-2.0
2,150,535	-		Sama_1758	0.13	-0.7
2,150,590	+		Sama_1758	0.16	+0.5
2,150,591	-		Sama_1758	0.16	-3.0
2,150,591	-		Sama_1758	0.16	-2.0
2,150,591	-		Sama_1758	0.16	-0.9
2,150,591	-		Sama_1758	0.16	-1.2
2,150,591	-		Sama_1758	0.16	-0.5
2,150,591	-		Sama_1758	0.16	-1.3
2,150,592	+		Sama_1758	0.16	+0.4
2,150,593	-		Sama_1758	0.16	-2.0
2,150,593	-		Sama_1758	0.16	+0.5
2,150,593	-		Sama_1758	0.16	-1.7
2,150,596	+		Sama_1758	0.16	-2.3
2,150,597	-		Sama_1758	0.16	-0.3
2,150,665	+		Sama_1758	0.21	-2.2
2,150,666	-		Sama_1758	0.21	-2.0
2,150,666	-		Sama_1758	0.21	-1.0
2,150,666	-		Sama_1758	0.21	-1.0
2,150,697	-		Sama_1758	0.23	+0.8
2,150,725	-		Sama_1758	0.24	-1.5
2,150,737	-		Sama_1758	0.25	-1.2
2,150,775	+		Sama_1758	0.27	+0.1
2,150,833	+		Sama_1758	0.31	-1.9
2,150,842	+		Sama_1758	0.32	-2.8
2,150,842	+		Sama_1758	0.32	-0.7
2,150,862	+		Sama_1758	0.33	-0.1
2,150,871	+		Sama_1758	0.33	-0.9
2,150,892	+		Sama_1758	0.35	-4.1
2,150,899	+		Sama_1758	0.35	-1.2
2,150,900	-		Sama_1758	0.35	+1.4
2,150,903	+		Sama_1758	0.35	-1.2
2,150,935	+		Sama_1758	0.37	-1.1
2,150,936	-		Sama_1758	0.37	-2.3
2,150,936	-		Sama_1758	0.37	-1.7
2,150,937	+		Sama_1758	0.37	-2.9
2,150,956	+		Sama_1758	0.39	-2.6
2,150,956	+		Sama_1758	0.39	-2.2
2,151,064	+		Sama_1758	0.45	-1.7
2,151,067	+		Sama_1758	0.45	-1.5
2,151,067	+		Sama_1758	0.45	+1.5
2,151,067	+		Sama_1758	0.45	-2.9
2,151,067	+		Sama_1758	0.45	-0.0
2,151,067	+		Sama_1758	0.45	+0.1
2,151,068	-		Sama_1758	0.46	-2.0
2,151,068	-		Sama_1758	0.46	-2.3
2,151,068	-		Sama_1758	0.46	-1.5
2,151,119	+		Sama_1758	0.49	-2.7
2,151,119	+		Sama_1758	0.49	-1.5
2,151,119	+		Sama_1758	0.49	-1.3
2,151,119	+		Sama_1758	0.49	+0.1