Strain Fitness in Shewanella amazonensis SB2B around Sama_1691

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,066,066	-				+0.4
2,066,067	+				-0.0
2,066,067	+				+0.4
2,066,068	-				+0.5
2,066,068	-				-1.4
2,066,068	-				+0.8
2,066,068	-				+0.1
2,066,114	-				+0.5
2,066,135	+				+0.7
2,066,136	-				-1.1
2,066,155	-				+0.3
2,066,203	+		Sama_1690	0.17	-1.7
2,066,204	-		Sama_1690	0.17	-0.5
2,066,204	-		Sama_1690	0.17	-0.8
2,066,204	-		Sama_1690	0.17	+1.3
2,066,204	-		Sama_1690	0.17	+1.5
2,066,307	+		Sama_1690	0.32	+1.3
2,066,308	-		Sama_1690	0.32	-1.6
2,066,308	-		Sama_1690	0.32	-0.1
2,066,383	+		Sama_1690	0.43	-2.7
2,066,383	+		Sama_1690	0.43	+1.1
2,066,384	-		Sama_1690	0.43	+1.1
2,066,459	-		Sama_1690	0.54	+0.8
2,066,476	+		Sama_1690	0.57	-1.0
2,066,476	+		Sama_1690	0.57	-0.5
2,066,477	-		Sama_1690	0.57	-1.2
2,066,477	-		Sama_1690	0.57	+0.1
2,066,561	+		Sama_1690	0.69	+1.0
2,066,562	-		Sama_1690	0.70	-1.6
2,066,687	+		Sama_1690	0.88	-1.3
2,066,688	-		Sama_1690	0.88	-0.7
2,066,691	-		Sama_1690	0.89	+0.3
2,066,765	+				-0.2
2,066,765	+				-0.6
2,066,766	-				+1.1
2,066,873	+				-0.0
2,066,876	+				-1.5
2,066,970	-				-1.5
2,066,974	+				+0.8
2,066,986	+				-1.7
2,066,991	+				-1.5
2,066,992	-				-3.7
2,066,992	-				-2.0
2,066,993	+				-2.3
2,066,993	+				-1.9
2,067,061	-				-0.5
2,067,061	-				-1.7
2,067,284	-	mdoG	Sama_1691	0.15	-2.6
2,067,284	-	mdoG	Sama_1691	0.15	-2.7
2,067,331	+	mdoG	Sama_1691	0.18	-3.3
2,067,331	+	mdoG	Sama_1691	0.18	-3.0
2,067,332	-	mdoG	Sama_1691	0.18	-3.3
2,067,427	+	mdoG	Sama_1691	0.24	-0.5
2,067,487	+	mdoG	Sama_1691	0.28	-3.0
2,067,487	+	mdoG	Sama_1691	0.28	-2.5
2,067,553	+	mdoG	Sama_1691	0.32	-1.2
2,067,569	+	mdoG	Sama_1691	0.33	-2.0
2,067,661	+	mdoG	Sama_1691	0.39	-1.9
2,067,690	+	mdoG	Sama_1691	0.40	-3.0
2,067,884	+	mdoG	Sama_1691	0.52	-1.2
2,067,925	+	mdoG	Sama_1691	0.55	-3.3
2,067,925	+	mdoG	Sama_1691	0.55	-0.5
2,067,925	+	mdoG	Sama_1691	0.55	-2.1
2,067,925	+	mdoG	Sama_1691	0.55	-2.0
2,067,925	+	mdoG	Sama_1691	0.55	-1.5
2,067,926	-	mdoG	Sama_1691	0.55	-2.7
2,067,926	-	mdoG	Sama_1691	0.55	-3.4
2,067,926	-	mdoG	Sama_1691	0.55	-0.9
2,067,926	-	mdoG	Sama_1691	0.55	-1.5
2,068,071	+	mdoG	Sama_1691	0.64	-1.9
2,068,077	+	mdoG	Sama_1691	0.64	-2.7
2,068,120	+	mdoG	Sama_1691	0.67	-2.1
2,068,120	+	mdoG	Sama_1691	0.67	-1.5
2,068,120	+	mdoG	Sama_1691	0.67	-1.9
2,068,120	+	mdoG	Sama_1691	0.67	-3.0
2,068,121	-	mdoG	Sama_1691	0.67	-2.3
2,068,121	-	mdoG	Sama_1691	0.67	-3.0
2,068,121	-	mdoG	Sama_1691	0.67	-1.7
2,068,129	+	mdoG	Sama_1691	0.67	-3.9
2,068,130	-	mdoG	Sama_1691	0.68	-3.5
2,068,150	+	mdoG	Sama_1691	0.69	-0.9
2,068,150	+	mdoG	Sama_1691	0.69	-3.2
2,068,150	+	mdoG	Sama_1691	0.69	-4.2
2,068,150	+	mdoG	Sama_1691	0.69	-1.3
2,068,150	+	mdoG	Sama_1691	0.69	-1.5
2,068,150	+	mdoG	Sama_1691	0.69	-1.7
2,068,150	+	mdoG	Sama_1691	0.69	-2.0
2,068,150	+	mdoG	Sama_1691	0.69	-0.6
2,068,188	+	mdoG	Sama_1691	0.71	-2.3
2,068,312	+	mdoG	Sama_1691	0.79	-2.7
2,068,360	-	mdoG	Sama_1691	0.82	-1.5
2,068,364	+	mdoG	Sama_1691	0.82	-1.2
2,068,432	+	mdoG	Sama_1691	0.86	-1.7
2,068,540	+				-1.7
2,068,602	+				-2.5
2,068,602	+				-4.2
2,068,639	+				-1.2
2,068,639	+				-2.6
2,068,663	+				-2.3
2,068,663	+				+0.5
2,068,663	+				-2.8
2,068,663	+				-1.9
2,068,663	+				-0.9
2,068,663	+				-1.9
2,068,663	+				-1.2
2,068,664	-				-3.3
2,068,664	-				-3.4
2,068,741	+				-2.5
2,068,794	+				-1.2
2,068,795	-				-2.8
2,068,810	+				-3.4
2,068,811	-				-3.3
2,068,811	-				-2.7
2,068,897	+				-1.9
2,068,897	+				+1.1
2,068,898	-				-3.4
2,068,938	+		Sama_1692	0.10	-1.2
2,069,018	-		Sama_1692	0.14	-0.9
2,069,079	-		Sama_1692	0.17	-0.9
2,069,251	+		Sama_1692	0.25	-2.0
2,069,252	-		Sama_1692	0.25	-2.2
2,069,264	+		Sama_1692	0.26	-3.2
2,069,264	+		Sama_1692	0.26	-2.0
2,069,264	+		Sama_1692	0.26	-1.5
2,069,264	+		Sama_1692	0.26	-1.9
2,069,264	+		Sama_1692	0.26	-1.7
2,069,267	+		Sama_1692	0.26	-1.8
2,069,268	-		Sama_1692	0.26	-2.8
2,069,394	+		Sama_1692	0.32	+0.1
2,069,394	+		Sama_1692	0.32	-2.2
2,069,395	-		Sama_1692	0.32	-1.6
2,069,462	-		Sama_1692	0.35	-2.0
2,069,550	+		Sama_1692	0.39	-2.0