Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1641 and Sama_1642 are separated by 150 nucleotides Sama_1642 and Sama_1643 are separated by 158 nucleotides Sama_1643 and Sama_1644 are separated by 12 nucleotides
Sama_1641: Sama_1641 - polysaccharide biosynthesis protein (RefSeq), at 2,006,980 to 2,008,167
_1641
Sama_1642: Sama_1642 - carbonate dehydratase (RefSeq), at 2,008,318 to 2,008,929
_1642
Sama_1643: Sama_1643 - hypothetical protein (RefSeq), at 2,009,088 to 2,009,501
_1643
Sama_1644: Sama_1644 - topoisomerase IV, subunit B (RefSeq), at 2,009,514 to 2,010,695
_1644
Position (kb)
2008
2009 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2008.190 kb on - strand at 2008.190 kb on - strand at 2008.190 kb on - strand at 2008.230 kb on - strand at 2008.310 kb on - strand at 2008.310 kb on - strand at 2008.310 kb on - strand at 2008.319 kb on + strand at 2008.320 kb on - strand at 2008.320 kb on - strand at 2008.350 kb on + strand at 2008.350 kb on + strand at 2008.388 kb on + strand, within Sama_1642 at 2008.388 kb on + strand, within Sama_1642 at 2008.388 kb on + strand, within Sama_1642 at 2008.388 kb on + strand, within Sama_1642 at 2008.388 kb on + strand, within Sama_1642 at 2008.388 kb on + strand, within Sama_1642 at 2008.388 kb on + strand, within Sama_1642 at 2008.389 kb on - strand, within Sama_1642 at 2008.389 kb on - strand, within Sama_1642 at 2008.389 kb on - strand, within Sama_1642 at 2008.389 kb on - strand, within Sama_1642 at 2008.389 kb on - strand, within Sama_1642 at 2008.390 kb on + strand, within Sama_1642 at 2008.390 kb on + strand, within Sama_1642 at 2008.390 kb on + strand, within Sama_1642 at 2008.390 kb on + strand, within Sama_1642 at 2008.390 kb on + strand, within Sama_1642 at 2008.391 kb on - strand, within Sama_1642 at 2008.391 kb on - strand, within Sama_1642 at 2008.391 kb on - strand, within Sama_1642 at 2008.391 kb on - strand, within Sama_1642 at 2008.441 kb on + strand, within Sama_1642 at 2008.442 kb on - strand, within Sama_1642 at 2008.552 kb on + strand, within Sama_1642 at 2008.552 kb on + strand, within Sama_1642 at 2008.552 kb on + strand, within Sama_1642 at 2008.552 kb on + strand, within Sama_1642 at 2008.552 kb on + strand, within Sama_1642 at 2008.552 kb on + strand, within Sama_1642 at 2008.553 kb on - strand, within Sama_1642 at 2008.553 kb on - strand, within Sama_1642 at 2008.553 kb on - strand, within Sama_1642 at 2008.553 kb on - strand, within Sama_1642 at 2008.553 kb on - strand, within Sama_1642 at 2008.553 kb on - strand, within Sama_1642 at 2008.554 kb on + strand, within Sama_1642 at 2008.554 kb on + strand, within Sama_1642 at 2008.555 kb on - strand, within Sama_1642 at 2008.555 kb on - strand, within Sama_1642 at 2008.555 kb on - strand, within Sama_1642 at 2008.738 kb on - strand, within Sama_1642 at 2008.821 kb on - strand, within Sama_1642 at 2008.821 kb on - strand, within Sama_1642 at 2008.900 kb on - strand at 2008.900 kb on - strand at 2008.940 kb on + strand at 2008.941 kb on - strand at 2008.961 kb on + strand at 2008.961 kb on + strand at 2008.966 kb on + strand at 2008.966 kb on + strand at 2008.966 kb on + strand at 2009.027 kb on + strand at 2009.033 kb on + strand at 2009.080 kb on + strand at 2009.081 kb on - strand at 2009.081 kb on - strand at 2009.081 kb on - strand at 2009.103 kb on + strand at 2009.242 kb on + strand, within Sama_1643 at 2009.242 kb on + strand, within Sama_1643 at 2009.316 kb on + strand, within Sama_1643 at 2009.371 kb on + strand, within Sama_1643 at 2009.372 kb on - strand, within Sama_1643 at 2009.372 kb on - strand, within Sama_1643 at 2009.372 kb on - strand, within Sama_1643 at 2009.372 kb on - strand, within Sama_1643 at 2009.450 kb on + strand, within Sama_1643 at 2009.481 kb on + strand at 2009.482 kb on - strand at 2009.493 kb on + strand at 2009.494 kb on - strand at 2009.504 kb on + strand at 2009.504 kb on + strand at 2009.505 kb on - strand at 2009.505 kb on - strand at 2009.515 kb on + strand at 2009.516 kb on - strand at 2009.539 kb on - strand at 2009.544 kb on + strand at 2009.544 kb on + strand at 2009.545 kb on - strand at 2009.580 kb on - strand at 2009.590 kb on + strand at 2009.590 kb on + strand at 2009.591 kb on - strand at 2009.644 kb on + strand, within Sama_1644 at 2009.645 kb on - strand, within Sama_1644 at 2009.645 kb on - strand, within Sama_1644 at 2009.645 kb on - strand, within Sama_1644 at 2009.647 kb on + strand, within Sama_1644 at 2009.647 kb on + strand, within Sama_1644 at 2009.647 kb on + strand, within Sama_1644 at 2009.647 kb on + strand, within Sama_1644 at 2009.647 kb on + strand, within Sama_1644 at 2009.648 kb on - strand, within Sama_1644 at 2009.648 kb on - strand, within Sama_1644 at 2009.650 kb on + strand, within Sama_1644 at 2009.650 kb on + strand, within Sama_1644 at 2009.650 kb on + strand, within Sama_1644 at 2009.650 kb on + strand, within Sama_1644 at 2009.650 kb on + strand, within Sama_1644 at 2009.650 kb on + strand, within Sama_1644 at 2009.650 kb on + strand, within Sama_1644 at 2009.650 kb on + strand, within Sama_1644 at 2009.651 kb on - strand, within Sama_1644 at 2009.651 kb on - strand, within Sama_1644 at 2009.651 kb on - strand, within Sama_1644 at 2009.651 kb on - strand, within Sama_1644 at 2009.651 kb on - strand, within Sama_1644 at 2009.651 kb on - strand, within Sama_1644 at 2009.651 kb on - strand, within Sama_1644 at 2009.651 kb on - strand, within Sama_1644 at 2009.651 kb on - strand, within Sama_1644 at 2009.651 kb on - strand, within Sama_1644 at 2009.651 kb on - strand, within Sama_1644 at 2009.655 kb on - strand, within Sama_1644 at 2009.706 kb on + strand, within Sama_1644 at 2009.707 kb on - strand, within Sama_1644 at 2009.738 kb on + strand, within Sama_1644 at 2009.740 kb on + strand, within Sama_1644 at 2009.740 kb on + strand, within Sama_1644 at 2009.740 kb on + strand, within Sama_1644 at 2009.741 kb on - strand, within Sama_1644 at 2009.797 kb on + strand, within Sama_1644 at 2009.798 kb on - strand, within Sama_1644 at 2009.909 kb on + strand, within Sama_1644 at 2009.929 kb on + strand, within Sama_1644 at 2009.929 kb on + strand, within Sama_1644 at 2009.929 kb on + strand, within Sama_1644
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 2,008,190 - -1.5 2,008,190 - -1.7 2,008,190 - -0.6 2,008,230 - -2.1 2,008,310 - +0.1 2,008,310 - +0.3 2,008,310 - +0.6 2,008,319 + +0.0 2,008,320 - -0.2 2,008,320 - +0.4 2,008,350 + +0.1 2,008,350 + +0.9 2,008,388 + Sama_1642 0.11 -0.2 2,008,388 + Sama_1642 0.11 -1.3 2,008,388 + Sama_1642 0.11 -0.0 2,008,388 + Sama_1642 0.11 -1.5 2,008,388 + Sama_1642 0.11 +0.2 2,008,388 + Sama_1642 0.11 +0.8 2,008,388 + Sama_1642 0.11 -1.0 2,008,389 - Sama_1642 0.12 -1.6 2,008,389 - Sama_1642 0.12 -1.3 2,008,389 - Sama_1642 0.12 -1.5 2,008,389 - Sama_1642 0.12 -2.2 2,008,389 - Sama_1642 0.12 +0.4 2,008,390 + Sama_1642 0.12 -0.9 2,008,390 + Sama_1642 0.12 -0.4 2,008,390 + Sama_1642 0.12 -0.2 2,008,390 + Sama_1642 0.12 -0.7 2,008,390 + Sama_1642 0.12 +0.6 2,008,391 - Sama_1642 0.12 -1.4 2,008,391 - Sama_1642 0.12 -3.3 2,008,391 - Sama_1642 0.12 +0.5 2,008,391 - Sama_1642 0.12 +0.3 2,008,441 + Sama_1642 0.20 +1.1 2,008,442 - Sama_1642 0.20 -1.7 2,008,552 + Sama_1642 0.38 -0.8 2,008,552 + Sama_1642 0.38 -0.4 2,008,552 + Sama_1642 0.38 +1.1 2,008,552 + Sama_1642 0.38 -0.9 2,008,552 + Sama_1642 0.38 +0.1 2,008,552 + Sama_1642 0.38 -0.8 2,008,553 - Sama_1642 0.38 -2.0 2,008,553 - Sama_1642 0.38 -0.5 2,008,553 - Sama_1642 0.38 +0.3 2,008,553 - Sama_1642 0.38 -0.9 2,008,553 - Sama_1642 0.38 -0.6 2,008,553 - Sama_1642 0.38 -2.7 2,008,554 + Sama_1642 0.39 -0.7 2,008,554 + Sama_1642 0.39 -2.2 2,008,555 - Sama_1642 0.39 +0.8 2,008,555 - Sama_1642 0.39 -1.4 2,008,555 - Sama_1642 0.39 -1.2 2,008,738 - Sama_1642 0.69 +0.9 2,008,821 - Sama_1642 0.82 -0.5 2,008,821 - Sama_1642 0.82 +0.7 2,008,900 - +0.6 2,008,900 - -1.5 2,008,940 + -0.5 2,008,941 - -0.6 2,008,961 + -0.6 2,008,961 + -1.6 2,008,966 + -1.8 2,008,966 + -0.9 2,008,966 + -0.6 2,009,027 + -0.9 2,009,033 + -0.1 2,009,080 + -1.9 2,009,081 - -1.2 2,009,081 - -0.1 2,009,081 - -0.9 2,009,103 + -1.3 2,009,242 + Sama_1643 0.37 -0.5 2,009,242 + Sama_1643 0.37 -0.5 2,009,316 + Sama_1643 0.55 -0.0 2,009,371 + Sama_1643 0.68 -2.0 2,009,372 - Sama_1643 0.69 +0.6 2,009,372 - Sama_1643 0.69 +1.1 2,009,372 - Sama_1643 0.69 -0.1 2,009,372 - Sama_1643 0.69 +0.5 2,009,450 + Sama_1643 0.87 -0.8 2,009,481 + -0.9 2,009,482 - -1.9 2,009,493 + +1.5 2,009,494 - -0.7 2,009,504 + -0.0 2,009,504 + +0.0 2,009,505 - -1.7 2,009,505 - -1.9 2,009,515 + +1.1 2,009,516 - +0.0 2,009,539 - -1.9 2,009,544 + -0.8 2,009,544 + +0.8 2,009,545 - +1.1 2,009,580 - -1.7 2,009,590 + -2.5 2,009,590 + -0.9 2,009,591 - -0.6 2,009,644 + Sama_1644 0.11 +1.5 2,009,645 - Sama_1644 0.11 -0.9 2,009,645 - Sama_1644 0.11 +0.8 2,009,645 - Sama_1644 0.11 -0.1 2,009,647 + Sama_1644 0.11 +0.1 2,009,647 + Sama_1644 0.11 -0.2 2,009,647 + Sama_1644 0.11 +0.2 2,009,647 + Sama_1644 0.11 -0.6 2,009,647 + Sama_1644 0.11 +0.7 2,009,648 - Sama_1644 0.11 -2.2 2,009,648 - Sama_1644 0.11 +0.5 2,009,650 + Sama_1644 0.12 +0.3 2,009,650 + Sama_1644 0.12 +1.1 2,009,650 + Sama_1644 0.12 -1.9 2,009,650 + Sama_1644 0.12 -0.1 2,009,650 + Sama_1644 0.12 +0.3 2,009,650 + Sama_1644 0.12 -0.2 2,009,650 + Sama_1644 0.12 -0.1 2,009,650 + Sama_1644 0.12 -0.3 2,009,651 - Sama_1644 0.12 -0.8 2,009,651 - Sama_1644 0.12 +0.1 2,009,651 - Sama_1644 0.12 +0.7 2,009,651 - Sama_1644 0.12 -1.3 2,009,651 - Sama_1644 0.12 -1.7 2,009,651 - Sama_1644 0.12 -0.1 2,009,651 - Sama_1644 0.12 +2.1 2,009,651 - Sama_1644 0.12 -0.6 2,009,651 - Sama_1644 0.12 -0.5 2,009,651 - Sama_1644 0.12 +0.2 2,009,651 - Sama_1644 0.12 +0.2 2,009,655 - Sama_1644 0.12 +0.2 2,009,706 + Sama_1644 0.16 +0.4 2,009,707 - Sama_1644 0.16 +0.4 2,009,738 + Sama_1644 0.19 +0.1 2,009,740 + Sama_1644 0.19 +0.1 2,009,740 + Sama_1644 0.19 +0.8 2,009,740 + Sama_1644 0.19 -0.4 2,009,741 - Sama_1644 0.19 -0.3 2,009,797 + Sama_1644 0.24 +0.1 2,009,798 - Sama_1644 0.24 +0.2 2,009,909 + Sama_1644 0.33 +0.7 2,009,929 + Sama_1644 0.35 -0.9 2,009,929 + Sama_1644 0.35 +1.0 2,009,929 + Sama_1644 0.35 +0.9
Or see this region's nucleotide sequence