Strain Fitness in Shewanella amazonensis SB2B around Sama_1601

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,955,835	+	rlmL	Sama_1600	0.53	-1.1
1,955,835	+	rlmL	Sama_1600	0.53	-1.5
1,955,836	-	rlmL	Sama_1600	0.53	-1.2
1,955,982	+	rlmL	Sama_1600	0.60	-2.5
1,956,012	+	rlmL	Sama_1600	0.61	-2.1
1,956,012	+	rlmL	Sama_1600	0.61	-1.9
1,956,013	-	rlmL	Sama_1600	0.61	+0.2
1,956,042	+	rlmL	Sama_1600	0.62	-0.3
1,956,042	+	rlmL	Sama_1600	0.62	-1.6
1,956,042	+	rlmL	Sama_1600	0.62	+0.9
1,956,042	+	rlmL	Sama_1600	0.62	-0.7
1,956,043	-	rlmL	Sama_1600	0.63	-1.9
1,956,043	-	rlmL	Sama_1600	0.63	-1.5
1,956,049	+	rlmL	Sama_1600	0.63	-0.5
1,956,143	+	rlmL	Sama_1600	0.67	-1.6
1,956,143	+	rlmL	Sama_1600	0.67	-1.0
1,956,145	+	rlmL	Sama_1600	0.67	-0.9
1,956,160	+	rlmL	Sama_1600	0.68	-3.5
1,956,160	+	rlmL	Sama_1600	0.68	-0.2
1,956,160	+	rlmL	Sama_1600	0.68	-1.2
1,956,167	+	rlmL	Sama_1600	0.68	-2.2
1,956,167	+	rlmL	Sama_1600	0.68	-0.7
1,956,167	+	rlmL	Sama_1600	0.68	-0.9
1,956,279	+	rlmL	Sama_1600	0.74	-3.3
1,956,425	+	rlmL	Sama_1600	0.80	-1.7
1,956,433	+	rlmL	Sama_1600	0.81	-0.5
1,956,434	+	rlmL	Sama_1600	0.81	-0.1
1,956,434	+	rlmL	Sama_1600	0.81	-1.5
1,956,434	+	rlmL	Sama_1600	0.81	-1.7
1,956,434	+	rlmL	Sama_1600	0.81	-0.4
1,956,443	+	rlmL	Sama_1600	0.81	-0.7
1,956,443	+	rlmL	Sama_1600	0.81	-0.7
1,956,443	+	rlmL	Sama_1600	0.81	-0.4
1,956,443	+	rlmL	Sama_1600	0.81	+1.1
1,956,444	-	rlmL	Sama_1600	0.81	-0.5
1,956,473	+	rlmL	Sama_1600	0.83	-1.3
1,956,473	+	rlmL	Sama_1600	0.83	-0.0
1,956,474	-	rlmL	Sama_1600	0.83	+1.1
1,956,501	+	rlmL	Sama_1600	0.84	+1.1
1,956,502	-	rlmL	Sama_1600	0.84	-1.5
1,956,502	-	rlmL	Sama_1600	0.84	-1.9
1,956,527	-	rlmL	Sama_1600	0.85	-1.7
1,956,622	+	rlmL	Sama_1600	0.90	+0.5
1,956,622	+	rlmL	Sama_1600	0.90	+0.3
1,956,757	+				-0.1
1,956,757	+				-0.5
1,956,850	+				-1.5
1,956,850	+				-1.2
1,956,850	+				-1.2
1,956,916	+		Sama_1601	0.37	-1.4
1,956,930	+		Sama_1601	0.43	-1.5
1,956,931	-		Sama_1601	0.43	-2.2
1,956,986	+		Sama_1601	0.68	-1.5
1,956,986	+		Sama_1601	0.68	+0.5
1,956,990	+		Sama_1601	0.69	-2.2
1,956,991	-		Sama_1601	0.70	-1.7
1,957,075	+				+0.0
1,957,104	-				-1.9
1,957,104	-				-0.3
1,957,113	+				-0.1
1,957,159	+				+0.5
1,957,311	-		Sama_1602	0.13	-2.2
1,957,316	+		Sama_1602	0.13	-1.3
1,957,316	+		Sama_1602	0.13	+0.3
1,957,399	+		Sama_1602	0.18	-0.2
1,957,399	+		Sama_1602	0.18	-1.9
1,957,399	+		Sama_1602	0.18	-1.7
1,957,399	+		Sama_1602	0.18	-0.4
1,957,500	+		Sama_1602	0.23	-2.1
1,957,673	+		Sama_1602	0.32	+0.5
1,957,673	+		Sama_1602	0.32	-0.9
1,957,673	+		Sama_1602	0.32	-1.5
1,957,674	-		Sama_1602	0.32	-1.7
1,957,674	-		Sama_1602	0.32	-1.2
1,957,782	-		Sama_1602	0.38	-1.9
1,957,790	+		Sama_1602	0.38	-0.4
1,957,791	-		Sama_1602	0.38	-0.2
1,957,791	-		Sama_1602	0.38	-2.9
1,957,878	+		Sama_1602	0.43	+0.4
1,957,878	+		Sama_1602	0.43	-0.5
1,957,909	+		Sama_1602	0.44	-0.9
1,957,933	+		Sama_1602	0.45	-2.7
1,957,933	+		Sama_1602	0.45	-1.3
1,958,034	+		Sama_1602	0.51	+0.1
1,958,034	+		Sama_1602	0.51	+0.0
1,958,035	-		Sama_1602	0.51	+0.3
1,958,048	+		Sama_1602	0.51	-1.6
1,958,048	+		Sama_1602	0.51	-0.5