Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1593 and Sama_1594 are separated by 180 nucleotides Sama_1594 and Sama_1595 are separated by 176 nucleotides Sama_1595 and Sama_1596 are separated by 27 nucleotides
Sama_1593: Sama_1593 - dihydroorotate dehydrogenase 2 (RefSeq), at 1,945,662 to 1,946,681
_1593
Sama_1594: Sama_1594 - hypothetical protein (RefSeq), at 1,946,862 to 1,947,395
_1594
Sama_1595: Sama_1595 - hypothetical protein (RefSeq), at 1,947,572 to 1,947,811
_1595
Sama_1596: Sama_1596 - hypothetical protein (RefSeq), at 1,947,839 to 1,948,735
_1596
Position (kb)
1946
1947
1948 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1945.913 kb on - strand, within Sama_1593 at 1945.913 kb on - strand, within Sama_1593 at 1946.096 kb on + strand, within Sama_1593 at 1946.097 kb on - strand, within Sama_1593 at 1946.135 kb on + strand, within Sama_1593 at 1946.141 kb on + strand, within Sama_1593 at 1946.178 kb on - strand, within Sama_1593 at 1946.293 kb on - strand, within Sama_1593 at 1946.465 kb on + strand, within Sama_1593 at 1946.611 kb on + strand at 1946.719 kb on - strand at 1946.722 kb on - strand at 1946.762 kb on - strand at 1946.762 kb on - strand at 1946.772 kb on + strand at 1946.773 kb on - strand at 1946.825 kb on - strand at 1946.844 kb on + strand at 1946.861 kb on + strand at 1946.866 kb on + strand at 1946.866 kb on + strand at 1946.898 kb on + strand at 1946.900 kb on + strand at 1946.911 kb on - strand at 1947.172 kb on + strand, within Sama_1594 at 1947.172 kb on + strand, within Sama_1594 at 1947.173 kb on - strand, within Sama_1594 at 1947.178 kb on + strand, within Sama_1594 at 1947.179 kb on - strand, within Sama_1594 at 1947.393 kb on + strand at 1947.396 kb on + strand at 1947.495 kb on + strand at 1947.505 kb on - strand at 1947.523 kb on - strand at 1947.526 kb on + strand at 1947.542 kb on + strand at 1947.543 kb on - strand at 1947.543 kb on - strand at 1947.571 kb on + strand at 1947.571 kb on + strand at 1947.571 kb on + strand at 1947.572 kb on - strand at 1947.572 kb on - strand at 1947.577 kb on + strand at 1947.577 kb on + strand at 1947.583 kb on + strand at 1947.616 kb on + strand, within Sama_1595 at 1947.616 kb on + strand, within Sama_1595 at 1947.616 kb on + strand, within Sama_1595 at 1947.616 kb on + strand, within Sama_1595 at 1947.616 kb on + strand, within Sama_1595 at 1947.641 kb on - strand, within Sama_1595 at 1947.837 kb on + strand at 1947.837 kb on + strand at 1947.837 kb on + strand at 1947.838 kb on - strand at 1947.847 kb on + strand at 1947.847 kb on + strand at 1947.871 kb on + strand at 1948.003 kb on + strand, within Sama_1596 at 1948.127 kb on + strand, within Sama_1596 at 1948.283 kb on - strand, within Sama_1596 at 1948.379 kb on + strand, within Sama_1596 at 1948.379 kb on + strand, within Sama_1596 at 1948.379 kb on + strand, within Sama_1596 at 1948.379 kb on + strand, within Sama_1596 at 1948.380 kb on - strand, within Sama_1596 at 1948.380 kb on - strand, within Sama_1596 at 1948.380 kb on - strand, within Sama_1596 at 1948.383 kb on + strand, within Sama_1596 at 1948.383 kb on + strand, within Sama_1596 at 1948.383 kb on + strand, within Sama_1596 at 1948.384 kb on - strand, within Sama_1596 at 1948.384 kb on - strand, within Sama_1596
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 1,945,913 - Sama_1593 0.25 -2.5 1,945,913 - Sama_1593 0.25 -0.5 1,946,096 + Sama_1593 0.43 -2.7 1,946,097 - Sama_1593 0.43 -0.5 1,946,135 + Sama_1593 0.46 -1.4 1,946,141 + Sama_1593 0.47 -2.2 1,946,178 - Sama_1593 0.51 -1.2 1,946,293 - Sama_1593 0.62 +0.1 1,946,465 + Sama_1593 0.79 +0.1 1,946,611 + +0.1 1,946,719 - -1.5 1,946,722 - +1.1 1,946,762 - -1.1 1,946,762 - +0.3 1,946,772 + -0.6 1,946,773 - -0.9 1,946,825 - -1.7 1,946,844 + -0.2 1,946,861 + -0.5 1,946,866 + -0.9 1,946,866 + +0.3 1,946,898 + -0.5 1,946,900 + +1.3 1,946,911 - -0.0 1,947,172 + Sama_1594 0.58 +0.7 1,947,172 + Sama_1594 0.58 -1.5 1,947,173 - Sama_1594 0.58 -0.5 1,947,178 + Sama_1594 0.59 -2.6 1,947,179 - Sama_1594 0.59 -2.5 1,947,393 + -0.9 1,947,396 + -0.5 1,947,495 + +0.5 1,947,505 - +0.1 1,947,523 - -0.5 1,947,526 + -0.7 1,947,542 + +0.5 1,947,543 - +0.9 1,947,543 - +0.5 1,947,571 + -0.3 1,947,571 + -0.8 1,947,571 + -1.9 1,947,572 - +0.7 1,947,572 - -0.8 1,947,577 + -1.0 1,947,577 + -0.4 1,947,583 + +0.9 1,947,616 + Sama_1595 0.18 -0.3 1,947,616 + Sama_1595 0.18 -0.1 1,947,616 + Sama_1595 0.18 +0.5 1,947,616 + Sama_1595 0.18 -0.9 1,947,616 + Sama_1595 0.18 -0.9 1,947,641 - Sama_1595 0.29 -0.7 1,947,837 + -1.3 1,947,837 + -0.6 1,947,837 + +1.1 1,947,838 - -0.9 1,947,847 + +0.0 1,947,847 + -0.5 1,947,871 + +1.1 1,948,003 + Sama_1596 0.18 -1.3 1,948,127 + Sama_1596 0.32 -0.4 1,948,283 - Sama_1596 0.49 -0.5 1,948,379 + Sama_1596 0.60 -1.1 1,948,379 + Sama_1596 0.60 +2.3 1,948,379 + Sama_1596 0.60 +0.3 1,948,379 + Sama_1596 0.60 -2.7 1,948,380 - Sama_1596 0.60 +0.9 1,948,380 - Sama_1596 0.60 -0.8 1,948,380 - Sama_1596 0.60 -0.1 1,948,383 + Sama_1596 0.61 +1.0 1,948,383 + Sama_1596 0.61 +0.5 1,948,383 + Sama_1596 0.61 -0.3 1,948,384 - Sama_1596 0.61 +0.1 1,948,384 - Sama_1596 0.61 +0.3
Or see this region's nucleotide sequence