Strain Fitness in Shewanella amazonensis SB2B around Sama_1593

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,944,712	+		Sama_1592	0.83	-2.6
1,944,712	+		Sama_1592	0.83	-1.7
1,944,727	+		Sama_1592	0.84	-4.2
1,944,727	+		Sama_1592	0.84	-2.2
1,944,812	-		Sama_1592	0.85	-0.9
1,944,824	-		Sama_1592	0.86	+0.4
1,944,840	+		Sama_1592	0.86	-0.9
1,945,004	+		Sama_1592	0.89	-0.5
1,945,004	+		Sama_1592	0.89	-2.3
1,945,004	+		Sama_1592	0.89	-2.3
1,945,004	+		Sama_1592	0.89	-2.0
1,945,005	-		Sama_1592	0.89	-2.3
1,945,005	-		Sama_1592	0.89	-2.0
1,945,153	+				-2.8
1,945,153	+				-0.9
1,945,181	+				-1.2
1,945,203	+				+0.1
1,945,203	+				-2.1
1,945,203	+				-2.7
1,945,204	-				-2.5
1,945,339	+				-0.9
1,945,387	+				-2.3
1,945,591	+				-0.9
1,945,591	+				+1.1
1,945,592	-				-0.5
1,945,685	+				+1.4
1,945,685	+				-0.5
1,945,761	-				-2.0
1,945,761	-				+0.8
1,945,857	-		Sama_1593	0.19	-2.7
1,945,913	-		Sama_1593	0.25	-2.5
1,945,913	-		Sama_1593	0.25	-0.5
1,946,096	+		Sama_1593	0.43	-2.7
1,946,097	-		Sama_1593	0.43	-0.5
1,946,135	+		Sama_1593	0.46	-1.4
1,946,141	+		Sama_1593	0.47	-2.2
1,946,178	-		Sama_1593	0.51	-1.2
1,946,293	-		Sama_1593	0.62	+0.1
1,946,465	+		Sama_1593	0.79	+0.1
1,946,611	+				+0.1
1,946,719	-				-1.5
1,946,722	-				+1.1
1,946,762	-				-1.1
1,946,762	-				+0.3
1,946,772	+				-0.6
1,946,773	-				-0.9
1,946,825	-				-1.7
1,946,844	+				-0.2
1,946,861	+				-0.5
1,946,866	+				-0.9
1,946,866	+				+0.3
1,946,898	+				-0.5
1,946,900	+				+1.3
1,946,911	-				-0.0
1,947,172	+		Sama_1594	0.58	+0.7
1,947,172	+		Sama_1594	0.58	-1.5
1,947,173	-		Sama_1594	0.58	-0.5
1,947,178	+		Sama_1594	0.59	-2.6
1,947,179	-		Sama_1594	0.59	-2.5
1,947,393	+				-0.9
1,947,396	+				-0.5
1,947,495	+				+0.5
1,947,505	-				+0.1
1,947,523	-				-0.5
1,947,526	+				-0.7
1,947,542	+				+0.5
1,947,543	-				+0.9
1,947,543	-				+0.5
1,947,571	+				-0.3
1,947,571	+				-0.8
1,947,571	+				-1.9
1,947,572	-				+0.7
1,947,572	-				-0.8
1,947,577	+				-1.0
1,947,577	+				-0.4
1,947,583	+				+0.9
1,947,616	+		Sama_1595	0.18	-0.3
1,947,616	+		Sama_1595	0.18	-0.1
1,947,616	+		Sama_1595	0.18	+0.5
1,947,616	+		Sama_1595	0.18	-0.9
1,947,616	+		Sama_1595	0.18	-0.9
1,947,641	-		Sama_1595	0.29	-0.7