Strain Fitness in Shewanella amazonensis SB2B around Sama_1592

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,939,769	+		Sama_1591	0.72	-2.2
1,939,769	+		Sama_1591	0.72	-1.9
1,939,769	+		Sama_1591	0.72	+0.5
1,939,769	+		Sama_1591	0.72	-0.4
1,939,770	-		Sama_1591	0.72	-0.5
1,939,780	+		Sama_1591	0.73	+1.0
1,939,781	-		Sama_1591	0.73	-0.9
1,939,781	-		Sama_1591	0.73	-1.9
1,939,824	+		Sama_1591	0.75	-1.2
1,939,824	+		Sama_1591	0.75	+0.3
1,939,825	-		Sama_1591	0.75	-0.6
1,939,946	+		Sama_1591	0.80	-0.2
1,939,947	-		Sama_1591	0.80	-2.2
1,939,952	+		Sama_1591	0.80	-1.6
1,939,953	-		Sama_1591	0.80	+0.4
1,940,005	+		Sama_1591	0.83	-0.3
1,940,027	+		Sama_1591	0.84	-0.4
1,940,027	+		Sama_1591	0.84	-0.1
1,940,028	-		Sama_1591	0.84	-2.2
1,940,028	-		Sama_1591	0.84	-1.9
1,940,028	-		Sama_1591	0.84	+1.1
1,940,073	+		Sama_1591	0.86	-0.7
1,940,073	+		Sama_1591	0.86	-1.1
1,940,073	+		Sama_1591	0.86	-1.7
1,940,074	-		Sama_1591	0.86	-1.2
1,940,074	-		Sama_1591	0.86	-2.3
1,940,119	+		Sama_1591	0.88	-2.3
1,940,121	+		Sama_1591	0.88	-0.6
1,940,121	+		Sama_1591	0.88	-1.5
1,940,121	+		Sama_1591	0.88	+2.4
1,940,121	+		Sama_1591	0.88	+0.1
1,940,122	-		Sama_1591	0.88	-0.2
1,940,122	-		Sama_1591	0.88	+0.8
1,940,122	-		Sama_1591	0.88	-0.2
1,940,122	-		Sama_1591	0.88	-1.3
1,940,133	-		Sama_1591	0.88	-0.1
1,940,133	-		Sama_1591	0.88	-2.0
1,940,133	-		Sama_1591	0.88	-2.2
1,940,137	+		Sama_1591	0.88	-1.6
1,940,137	+		Sama_1591	0.88	-0.7
1,940,138	-		Sama_1591	0.88	+0.3
1,940,141	+		Sama_1591	0.89	-1.8
1,940,141	+		Sama_1591	0.89	-0.7
1,940,142	-		Sama_1591	0.89	-1.9
1,940,144	-		Sama_1591	0.89	-0.7
1,940,187	+				-1.6
1,940,187	+				+0.3
1,940,187	+				-0.4
1,940,198	+				-0.2
1,940,199	-				+0.1
1,940,199	-				-0.8
1,940,211	+				+1.7
1,940,211	+				-1.8
1,940,211	+				+0.6
1,940,269	+				-1.3
1,940,290	+				-0.7
1,940,290	+				+0.1
1,940,290	+				+0.7
1,940,290	+				+0.7
1,940,291	-				+0.5
1,940,326	+				-0.9
1,940,341	+				-1.7
1,940,341	+				-1.9
1,940,341	+				-1.0
1,940,342	-				-2.2
1,940,359	+				-0.5
1,940,457	+				-1.5
1,940,457	+				-0.0
1,940,457	+				-2.0
1,940,462	-				-2.7
1,940,462	-				-0.9
1,940,514	-				-0.2
1,940,534	-				-0.7
1,940,534	-				-0.2
1,940,534	-				-0.7
1,940,567	+				-2.9
1,940,573	+				-2.2
1,940,619	+				-1.5
1,940,724	+				-2.0
1,940,795	+				-1.7
1,940,859	+				-1.5
1,941,043	+				-1.9
1,941,043	+				-2.5
1,941,043	+				-2.6
1,941,043	+				-1.9
1,941,043	+				-2.0
1,941,043	+				-2.2
1,941,229	-		Sama_1592	0.11	-0.7
1,941,229	-		Sama_1592	0.11	-1.2
1,941,585	+		Sama_1592	0.19	-3.3
1,941,608	+		Sama_1592	0.19	-2.3
1,941,689	+		Sama_1592	0.21	-1.1
1,941,692	-		Sama_1592	0.21	-2.5
1,941,779	+		Sama_1592	0.23	-0.8
1,941,779	+		Sama_1592	0.23	-2.5
1,941,796	+		Sama_1592	0.23	-2.7
1,941,950	+		Sama_1592	0.26	-1.2
1,941,950	+		Sama_1592	0.26	-1.2
1,941,950	+		Sama_1592	0.26	-2.6
1,941,950	+		Sama_1592	0.26	-1.2
1,941,951	-		Sama_1592	0.26	-2.5
1,941,954	+		Sama_1592	0.26	-1.9
1,941,968	+		Sama_1592	0.27	+0.1
1,941,968	+		Sama_1592	0.27	-2.3
1,941,968	+		Sama_1592	0.27	-0.9
1,942,049	+		Sama_1592	0.28	-1.2
1,942,049	+		Sama_1592	0.28	-0.9
1,942,082	+		Sama_1592	0.29	-3.3
1,942,086	+		Sama_1592	0.29	-3.8
1,942,086	+		Sama_1592	0.29	-2.5
1,942,086	+		Sama_1592	0.29	-1.9
1,942,105	+		Sama_1592	0.29	+1.1
1,942,105	+		Sama_1592	0.29	-2.2
1,942,105	+		Sama_1592	0.29	-0.5
1,942,116	+		Sama_1592	0.30	-2.8
1,942,116	+		Sama_1592	0.30	-2.8
1,942,178	+		Sama_1592	0.31	-2.8
1,942,259	+		Sama_1592	0.33	-1.4
1,942,349	+		Sama_1592	0.34	-2.8
1,942,349	+		Sama_1592	0.34	-1.2
1,942,405	+		Sama_1592	0.36	-1.9
1,942,484	+		Sama_1592	0.37	-1.0
1,942,706	+		Sama_1592	0.42	-1.7
1,942,742	+		Sama_1592	0.43	-1.5
1,942,903	+		Sama_1592	0.46	-3.6
1,942,988	+		Sama_1592	0.48	-1.9
1,942,988	+		Sama_1592	0.48	+0.1
1,942,988	+		Sama_1592	0.48	-3.3
1,943,076	+		Sama_1592	0.49	+0.1
1,943,371	-		Sama_1592	0.56	-2.5
1,943,396	+		Sama_1592	0.56	-1.5
1,943,465	+		Sama_1592	0.57	-1.9
1,943,563	+		Sama_1592	0.60	-2.0
1,943,798	+		Sama_1592	0.64	-0.5
1,943,798	+		Sama_1592	0.64	-1.2
1,943,926	+		Sama_1592	0.67	-2.5
1,943,981	+		Sama_1592	0.68	-2.7
1,943,981	+		Sama_1592	0.68	-0.8
1,943,981	+		Sama_1592	0.68	-1.2
1,943,981	+		Sama_1592	0.68	-1.2
1,943,981	+		Sama_1592	0.68	-3.1
1,943,981	+		Sama_1592	0.68	-1.7
1,944,100	+		Sama_1592	0.71	-0.8
1,944,122	+		Sama_1592	0.71	-2.3
1,944,316	+		Sama_1592	0.75	-1.9
1,944,351	+		Sama_1592	0.76	-2.2
1,944,351	+		Sama_1592	0.76	-3.7
1,944,712	+		Sama_1592	0.83	-2.6
1,944,712	+		Sama_1592	0.83	-1.7
1,944,727	+		Sama_1592	0.84	-4.2
1,944,727	+		Sama_1592	0.84	-2.2
1,944,812	-		Sama_1592	0.85	-0.9
1,944,824	-		Sama_1592	0.86	+0.4
1,944,840	+		Sama_1592	0.86	-0.9
1,945,004	+		Sama_1592	0.89	-0.5
1,945,004	+		Sama_1592	0.89	-2.3
1,945,004	+		Sama_1592	0.89	-2.3
1,945,004	+		Sama_1592	0.89	-2.0
1,945,005	-		Sama_1592	0.89	-2.3
1,945,005	-		Sama_1592	0.89	-2.0
1,945,153	+				-2.8
1,945,153	+				-0.9
1,945,181	+				-1.2
1,945,203	+				+0.1
1,945,203	+				-2.1
1,945,203	+				-2.7
1,945,204	-				-2.5
1,945,339	+				-0.9
1,945,387	+				-2.3
1,945,591	+				-0.9
1,945,591	+				+1.1
1,945,592	-				-0.5
1,945,685	+				+1.4
1,945,685	+				-0.5
1,945,761	-				-2.0
1,945,761	-				+0.8
1,945,857	-		Sama_1593	0.19	-2.7
1,945,913	-		Sama_1593	0.25	-2.5
1,945,913	-		Sama_1593	0.25	-0.5
1,946,096	+		Sama_1593	0.43	-2.7
1,946,097	-		Sama_1593	0.43	-0.5
1,946,135	+		Sama_1593	0.46	-1.4
1,946,141	+		Sama_1593	0.47	-2.2
1,946,178	-		Sama_1593	0.51	-1.2
1,946,293	-		Sama_1593	0.62	+0.1
1,946,465	+		Sama_1593	0.79	+0.1