Strain Fitness in Shewanella amazonensis SB2B around Sama_1586

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,929,327	+		Sama_1585	0.57	-2.8
1,929,327	+		Sama_1585	0.57	-2.9
1,929,327	+		Sama_1585	0.57	-2.2
1,929,340	+		Sama_1585	0.58	-1.9
1,929,485	+		Sama_1585	0.65	-2.3
1,929,518	+		Sama_1585	0.67	-3.0
1,929,563	+		Sama_1585	0.69	-2.8
1,929,641	+		Sama_1585	0.73	-1.2
1,929,641	+		Sama_1585	0.73	-4.9
1,929,641	+		Sama_1585	0.73	-2.6
1,929,641	+		Sama_1585	0.73	-1.5
1,929,641	+		Sama_1585	0.73	-2.6
1,929,650	+		Sama_1585	0.73	-2.9
1,929,700	+		Sama_1585	0.76	-1.9
1,929,724	+		Sama_1585	0.77	+0.5
1,929,733	+		Sama_1585	0.77	-1.8
1,929,776	+		Sama_1585	0.79	-1.9
1,929,796	+		Sama_1585	0.80	-1.7
1,929,850	+		Sama_1585	0.83	-0.3
1,930,142	+				-1.5
1,930,142	+				-2.5
1,930,142	+				-3.0
1,930,143	-				-3.1
1,930,144	+				-1.9
1,930,144	+				-0.9
1,930,249	-				-0.3
1,930,273	-				-1.2
1,930,294	+				+1.1
1,930,317	+				-1.0
1,930,332	+				-2.3
1,930,332	+				-0.5
1,930,333	-				+0.4
1,930,375	+				+0.1
1,930,391	+				-2.3
1,930,392	-				-0.6
1,930,498	-				-0.2
1,930,511	+				-0.5
1,930,591	-	pepN	Sama_1586	0.11	+0.8
1,930,625	+	pepN	Sama_1586	0.12	+0.4
1,930,625	+	pepN	Sama_1586	0.12	-1.1
1,930,625	+	pepN	Sama_1586	0.12	-0.0
1,930,625	+	pepN	Sama_1586	0.12	-1.1
1,930,626	-	pepN	Sama_1586	0.12	+0.2
1,930,626	-	pepN	Sama_1586	0.12	-0.9
1,930,626	-	pepN	Sama_1586	0.12	-0.2
1,930,678	+	pepN	Sama_1586	0.14	+2.1
1,930,682	-	pepN	Sama_1586	0.15	-0.7
1,930,685	+	pepN	Sama_1586	0.15	-0.9
1,930,686	-	pepN	Sama_1586	0.15	+1.0
1,930,686	-	pepN	Sama_1586	0.15	+0.7
1,930,718	+	pepN	Sama_1586	0.16	-1.3
1,930,757	+	pepN	Sama_1586	0.18	-2.7
1,930,775	-	pepN	Sama_1586	0.18	-1.2
1,930,814	+	pepN	Sama_1586	0.20	-1.6
1,930,851	-	pepN	Sama_1586	0.21	-1.3
1,930,956	+	pepN	Sama_1586	0.25	-0.1
1,930,956	+	pepN	Sama_1586	0.25	+0.4
1,930,960	+	pepN	Sama_1586	0.26	+1.1
1,931,031	-	pepN	Sama_1586	0.28	+0.9
1,931,043	+	pepN	Sama_1586	0.29	+0.6
1,931,045	+	pepN	Sama_1586	0.29	-0.9
1,931,045	+	pepN	Sama_1586	0.29	-1.3
1,931,046	-	pepN	Sama_1586	0.29	+1.3
1,931,046	-	pepN	Sama_1586	0.29	-0.0
1,931,055	+	pepN	Sama_1586	0.29	+1.0
1,931,056	-	pepN	Sama_1586	0.29	-1.0
1,931,111	-	pepN	Sama_1586	0.31	+0.4
1,931,113	+	pepN	Sama_1586	0.31	-2.0
1,931,120	+	pepN	Sama_1586	0.32	-0.5
1,931,120	+	pepN	Sama_1586	0.32	+1.4
1,931,121	-	pepN	Sama_1586	0.32	-1.9
1,931,121	-	pepN	Sama_1586	0.32	-2.6
1,931,192	+	pepN	Sama_1586	0.35	-1.9
1,931,192	+	pepN	Sama_1586	0.35	-0.9
1,931,193	-	pepN	Sama_1586	0.35	+0.4
1,931,222	-	pepN	Sama_1586	0.36	-0.9
1,931,313	+	pepN	Sama_1586	0.39	+0.8
1,931,321	-	pepN	Sama_1586	0.40	+0.9
1,931,423	+	pepN	Sama_1586	0.44	+0.1
1,931,438	+	pepN	Sama_1586	0.44	+0.1
1,931,438	+	pepN	Sama_1586	0.44	-0.1
1,931,473	+	pepN	Sama_1586	0.46	+0.7
1,931,473	+	pepN	Sama_1586	0.46	+1.9
1,931,474	-	pepN	Sama_1586	0.46	+1.4
1,931,507	-	pepN	Sama_1586	0.47	+1.1
1,931,615	+	pepN	Sama_1586	0.51	+1.1
1,931,615	+	pepN	Sama_1586	0.51	+0.6
1,931,616	-	pepN	Sama_1586	0.51	+1.0
1,931,618	-	pepN	Sama_1586	0.51	+0.1
1,931,787	+	pepN	Sama_1586	0.58	+0.2
1,931,807	-	pepN	Sama_1586	0.59	+1.0
1,931,856	+	pepN	Sama_1586	0.61	-1.5
1,931,856	+	pepN	Sama_1586	0.61	+1.3
1,931,900	+	pepN	Sama_1586	0.62	-1.2
1,931,900	+	pepN	Sama_1586	0.62	-1.1
1,931,900	+	pepN	Sama_1586	0.62	-0.7
1,931,901	-	pepN	Sama_1586	0.62	-1.7
1,931,923	+	pepN	Sama_1586	0.63	-0.5
1,931,923	+	pepN	Sama_1586	0.63	+0.1
1,931,938	+	pepN	Sama_1586	0.64	+1.1
1,932,034	+	pepN	Sama_1586	0.67	-1.9
1,932,133	+	pepN	Sama_1586	0.71	+0.9
1,932,133	+	pepN	Sama_1586	0.71	+0.3
1,932,134	-	pepN	Sama_1586	0.71	-1.1
1,932,134	-	pepN	Sama_1586	0.71	+0.5
1,932,134	-	pepN	Sama_1586	0.71	+0.5
1,932,134	-	pepN	Sama_1586	0.71	-0.5
1,932,156	+	pepN	Sama_1586	0.72	+1.7
1,932,157	-	pepN	Sama_1586	0.72	+0.4
1,932,260	+	pepN	Sama_1586	0.76	-0.1
1,932,260	+	pepN	Sama_1586	0.76	+0.6
1,932,292	+	pepN	Sama_1586	0.78	-2.6
1,932,376	+	pepN	Sama_1586	0.81	-0.9
1,932,436	+	pepN	Sama_1586	0.83	+0.9
1,932,437	-	pepN	Sama_1586	0.83	-0.3
1,932,437	-	pepN	Sama_1586	0.83	+0.3
1,932,490	+	pepN	Sama_1586	0.85	-0.8
1,932,490	+	pepN	Sama_1586	0.85	+3.9
1,932,490	+	pepN	Sama_1586	0.85	-1.1
1,932,490	+	pepN	Sama_1586	0.85	-2.2
1,932,490	+	pepN	Sama_1586	0.85	+0.2
1,932,490	+	pepN	Sama_1586	0.85	+0.1
1,932,499	+	pepN	Sama_1586	0.86	+0.1
1,932,499	+	pepN	Sama_1586	0.86	+0.2
1,932,499	+	pepN	Sama_1586	0.86	-0.0
1,932,499	+	pepN	Sama_1586	0.86	+1.3
1,932,504	+	pepN	Sama_1586	0.86	+0.5
1,932,504	+	pepN	Sama_1586	0.86	+0.0
1,932,563	-	pepN	Sama_1586	0.88	+1.4
1,932,662	+				+0.4
1,932,681	-				-0.5
1,932,730	+				+0.1
1,932,843	+				+1.0
1,932,877	+				+0.1
1,932,880	-				-1.0
1,932,897	+				+2.3
1,932,898	-				+1.3
1,932,916	-				+0.6
1,932,916	-				+0.1
1,932,960	-				+0.4
1,932,988	+		Sama_1587	0.13	-0.1
1,933,055	+		Sama_1587	0.38	-0.7
1,933,223	+				+0.3
1,933,243	-				-1.9
1,933,490	+				+0.3
1,933,494	+				-1.9
1,933,496	+				+0.5
1,933,529	+				-0.5
1,933,529	+				+1.1
1,933,529	+				-0.1
1,933,530	-				-1.0
1,933,530	-				-2.0
1,933,530	-				-1.5
1,933,608	-				+0.7
1,933,608	-				-0.0
1,933,782	+		Sama_1588	0.12	-0.7
1,933,783	-		Sama_1588	0.12	+1.1
1,933,783	-		Sama_1588	0.12	-0.3
1,933,818	+		Sama_1588	0.14	-0.6
1,933,818	+		Sama_1588	0.14	-0.9
1,933,818	+		Sama_1588	0.14	-0.5
1,933,819	-		Sama_1588	0.14	-0.0
1,933,826	+		Sama_1588	0.14	+1.1
1,933,826	+		Sama_1588	0.14	+0.4
1,933,826	+		Sama_1588	0.14	+1.1
1,933,846	+		Sama_1588	0.15	-1.5
1,933,846	+		Sama_1588	0.15	+1.9
1,933,851	+		Sama_1588	0.15	+0.7