Strain Fitness in Shewanella amazonensis SB2B around Sama_1585

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,927,208	+				-3.4
1,927,258	+				-0.1
1,927,260	+				+0.5
1,927,260	+				-0.7
1,927,260	+				-2.0
1,927,263	+				-0.8
1,927,263	+				-1.0
1,927,263	+				+0.1
1,927,263	+				-0.6
1,927,263	+				-1.9
1,927,263	+				-0.4
1,927,263	+				-0.1
1,927,263	+				-0.6
1,927,263	+				+0.3
1,927,263	+				-1.6
1,927,324	+				+1.1
1,927,324	+				-0.5
1,927,331	+				-0.1
1,927,360	+				-0.2
1,927,360	+				+0.7
1,927,444	+				-0.9
1,927,853	+		Sama_1584	0.59	-0.9
1,928,068	+				+0.5
1,928,068	+				-0.8
1,928,068	+				-0.3
1,928,068	+				-0.2
1,928,068	+				+1.4
1,928,109	+				+1.0
1,928,111	+				-0.6
1,928,111	+				-2.3
1,928,111	+				-0.7
1,928,113	+				-1.7
1,928,113	+				-3.0
1,928,318	+				-1.8
1,928,374	+		Sama_1585	0.11	-2.2
1,928,474	-		Sama_1585	0.16	-0.9
1,928,486	+		Sama_1585	0.16	-3.0
1,928,534	+		Sama_1585	0.19	-1.5
1,928,550	+		Sama_1585	0.19	-2.2
1,928,551	-		Sama_1585	0.19	-1.5
1,928,588	+		Sama_1585	0.21	-1.9
1,928,588	+		Sama_1585	0.21	+0.1
1,928,666	+		Sama_1585	0.25	-2.0
1,928,666	+		Sama_1585	0.25	-3.2
1,928,666	+		Sama_1585	0.25	-3.5
1,928,666	+		Sama_1585	0.25	-2.5
1,928,781	+		Sama_1585	0.31	-2.0
1,928,834	+		Sama_1585	0.33	-2.6
1,928,834	+		Sama_1585	0.33	-2.2
1,928,834	+		Sama_1585	0.33	-1.9
1,928,834	+		Sama_1585	0.33	-2.2
1,929,000	+		Sama_1585	0.41	-1.9
1,929,000	+		Sama_1585	0.41	-1.2
1,929,000	+		Sama_1585	0.41	-3.1
1,929,000	+		Sama_1585	0.41	-2.0
1,929,000	+		Sama_1585	0.41	-1.2
1,929,000	+		Sama_1585	0.41	-0.5
1,929,006	+		Sama_1585	0.42	-3.4
1,929,006	+		Sama_1585	0.42	-3.3
1,929,006	+		Sama_1585	0.42	-1.7
1,929,061	-		Sama_1585	0.44	-2.8
1,929,070	+		Sama_1585	0.45	-1.3
1,929,166	+		Sama_1585	0.50	-1.6
1,929,227	+		Sama_1585	0.52	-3.2
1,929,227	+		Sama_1585	0.52	-3.1
1,929,238	+		Sama_1585	0.53	-2.3
1,929,269	+		Sama_1585	0.55	-2.5
1,929,327	+		Sama_1585	0.57	-2.8
1,929,327	+		Sama_1585	0.57	-2.9
1,929,327	+		Sama_1585	0.57	-2.2
1,929,340	+		Sama_1585	0.58	-1.9
1,929,485	+		Sama_1585	0.65	-2.3
1,929,518	+		Sama_1585	0.67	-3.0
1,929,563	+		Sama_1585	0.69	-2.8
1,929,641	+		Sama_1585	0.73	-1.2
1,929,641	+		Sama_1585	0.73	-4.9
1,929,641	+		Sama_1585	0.73	-2.6
1,929,641	+		Sama_1585	0.73	-1.5
1,929,641	+		Sama_1585	0.73	-2.6
1,929,650	+		Sama_1585	0.73	-2.9
1,929,700	+		Sama_1585	0.76	-1.9
1,929,724	+		Sama_1585	0.77	+0.5
1,929,733	+		Sama_1585	0.77	-1.8
1,929,776	+		Sama_1585	0.79	-1.9
1,929,796	+		Sama_1585	0.80	-1.7
1,929,850	+		Sama_1585	0.83	-0.3
1,930,142	+				-1.5
1,930,142	+				-2.5
1,930,142	+				-3.0
1,930,143	-				-3.1
1,930,144	+				-1.9
1,930,144	+				-0.9
1,930,249	-				-0.3
1,930,273	-				-1.2
1,930,294	+				+1.1
1,930,317	+				-1.0
1,930,332	+				-2.3
1,930,332	+				-0.5
1,930,333	-				+0.4
1,930,375	+				+0.1
1,930,391	+				-2.3
1,930,392	-				-0.6
1,930,498	-				-0.2
1,930,511	+				-0.5
1,930,591	-	pepN	Sama_1586	0.11	+0.8
1,930,625	+	pepN	Sama_1586	0.12	+0.4
1,930,625	+	pepN	Sama_1586	0.12	-1.1
1,930,625	+	pepN	Sama_1586	0.12	-0.0
1,930,625	+	pepN	Sama_1586	0.12	-1.1
1,930,626	-	pepN	Sama_1586	0.12	+0.2
1,930,626	-	pepN	Sama_1586	0.12	-0.9
1,930,626	-	pepN	Sama_1586	0.12	-0.2
1,930,678	+	pepN	Sama_1586	0.14	+2.1
1,930,682	-	pepN	Sama_1586	0.15	-0.7
1,930,685	+	pepN	Sama_1586	0.15	-0.9
1,930,686	-	pepN	Sama_1586	0.15	+1.0
1,930,686	-	pepN	Sama_1586	0.15	+0.7
1,930,718	+	pepN	Sama_1586	0.16	-1.3
1,930,757	+	pepN	Sama_1586	0.18	-2.7
1,930,775	-	pepN	Sama_1586	0.18	-1.2
1,930,814	+	pepN	Sama_1586	0.20	-1.6
1,930,851	-	pepN	Sama_1586	0.21	-1.3
1,930,956	+	pepN	Sama_1586	0.25	-0.1
1,930,956	+	pepN	Sama_1586	0.25	+0.4
1,930,960	+	pepN	Sama_1586	0.26	+1.1
1,931,031	-	pepN	Sama_1586	0.28	+0.9
1,931,043	+	pepN	Sama_1586	0.29	+0.6
1,931,045	+	pepN	Sama_1586	0.29	-0.9
1,931,045	+	pepN	Sama_1586	0.29	-1.3
1,931,046	-	pepN	Sama_1586	0.29	+1.3
1,931,046	-	pepN	Sama_1586	0.29	-0.0
1,931,055	+	pepN	Sama_1586	0.29	+1.0
1,931,056	-	pepN	Sama_1586	0.29	-1.0
1,931,111	-	pepN	Sama_1586	0.31	+0.4
1,931,113	+	pepN	Sama_1586	0.31	-2.0
1,931,120	+	pepN	Sama_1586	0.32	-0.5
1,931,120	+	pepN	Sama_1586	0.32	+1.4
1,931,121	-	pepN	Sama_1586	0.32	-1.9
1,931,121	-	pepN	Sama_1586	0.32	-2.6
1,931,192	+	pepN	Sama_1586	0.35	-1.9
1,931,192	+	pepN	Sama_1586	0.35	-0.9
1,931,193	-	pepN	Sama_1586	0.35	+0.4