Strain Fitness in Shewanella amazonensis SB2B around Sama_1580

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,924,055	-		Sama_1579	0.63	-2.6
1,924,074	+		Sama_1579	0.63	-1.9
1,924,149	-		Sama_1579	0.66	-2.9
1,924,150	+		Sama_1579	0.66	-2.7
1,924,151	-		Sama_1579	0.66	-0.9
1,924,344	+		Sama_1579	0.74	-1.2
1,924,344	+		Sama_1579	0.74	-3.0
1,924,345	-		Sama_1579	0.74	-1.9
1,924,345	-		Sama_1579	0.74	-2.6
1,924,372	-		Sama_1579	0.75	-2.0
1,924,419	-		Sama_1579	0.77	-2.0
1,924,431	+		Sama_1579	0.77	-2.1
1,924,473	-		Sama_1579	0.79	-2.6
1,924,655	+		Sama_1579	0.86	-0.9
1,924,656	-		Sama_1579	0.86	-1.5
1,924,656	-		Sama_1579	0.86	-0.5
1,924,670	-		Sama_1579	0.86	-2.6
1,924,714	+		Sama_1579	0.88	-1.9
1,924,746	-		Sama_1579	0.89	-2.2
1,924,812	+				-0.2
1,924,812	+				-2.7
1,924,813	-				-1.2
1,924,813	-				-1.7
1,924,845	-				-1.9
1,925,006	-				-3.7
1,925,023	-				-2.7
1,925,058	-				-2.5
1,925,158	+		Sama_1580	0.22	-1.7
1,925,159	-		Sama_1580	0.22	-2.7
1,925,227	+		Sama_1580	0.33	-1.2
1,925,228	-		Sama_1580	0.33	-2.3
1,925,292	+		Sama_1580	0.43	-2.2
1,925,292	+		Sama_1580	0.43	-3.2
1,925,293	-		Sama_1580	0.44	-1.7
1,925,293	-		Sama_1580	0.44	-0.9
1,925,293	-		Sama_1580	0.44	-0.9
1,925,333	-		Sama_1580	0.50	-2.2
1,925,360	-		Sama_1580	0.54	-1.5
1,925,404	+		Sama_1580	0.61	-2.2
1,925,405	-		Sama_1580	0.61	-3.2
1,925,405	-		Sama_1580	0.61	-2.0
1,925,423	-		Sama_1580	0.64	-2.0
1,925,452	-		Sama_1580	0.69	-3.0
1,925,466	-		Sama_1580	0.71	+0.5
1,925,467	+		Sama_1580	0.71	-0.5
1,925,471	+		Sama_1580	0.72	-3.3
1,925,471	+		Sama_1580	0.72	-2.8
1,925,472	-		Sama_1580	0.72	-2.5
1,925,489	-		Sama_1580	0.75	-1.5
1,925,489	-		Sama_1580	0.75	-1.9
1,925,520	+		Sama_1580	0.80	-2.6
1,925,536	+		Sama_1580	0.82	-2.0
1,925,587	+				-1.2
1,925,588	-				+0.1
1,925,588	-				-1.9
1,925,588	-				-1.9
1,925,592	-				-1.7
1,925,798	-		Sama_1581	0.24	-0.9
1,925,844	+		Sama_1581	0.31	-3.1
1,925,852	+		Sama_1581	0.33	-1.5
1,925,852	+		Sama_1581	0.33	-2.5
1,925,852	+		Sama_1581	0.33	-3.0
1,925,852	+		Sama_1581	0.33	-2.2
1,925,853	-		Sama_1581	0.33	-1.9
1,925,854	+		Sama_1581	0.33	-0.9
1,925,854	+		Sama_1581	0.33	-1.5
1,925,854	+		Sama_1581	0.33	-2.3
1,925,854	+		Sama_1581	0.33	-2.6
1,925,855	-		Sama_1581	0.33	-3.0
1,925,855	-		Sama_1581	0.33	-2.6
1,925,928	+		Sama_1581	0.44	-2.9
1,925,940	+		Sama_1581	0.46	-3.5
1,925,940	+		Sama_1581	0.46	-1.3
1,925,941	-		Sama_1581	0.46	-2.5
1,925,941	-		Sama_1581	0.46	-2.6
1,926,079	-		Sama_1581	0.68	-1.5
1,926,100	-		Sama_1581	0.71	-1.7
1,926,126	-		Sama_1581	0.75	-1.7
1,926,126	-		Sama_1581	0.75	-3.3
1,926,145	+		Sama_1581	0.78	-2.0
1,926,145	+		Sama_1581	0.78	-2.9
1,926,146	-		Sama_1581	0.78	-4.1
1,926,146	-		Sama_1581	0.78	-0.9
1,926,155	+		Sama_1581	0.79	-0.9
1,926,155	+		Sama_1581	0.79	-0.2
1,926,155	+		Sama_1581	0.79	-1.7
1,926,156	-		Sama_1581	0.80	-2.9
1,926,156	-		Sama_1581	0.80	-1.9
1,926,266	+				-2.6
1,926,266	+				-1.5
1,926,266	+				-1.9
1,926,267	-				-0.9
1,926,267	-				-1.5
1,926,267	-				-1.7
1,926,274	+				+0.1
1,926,274	+				-2.3
1,926,275	-				+0.4
1,926,360	-				-2.0
1,926,372	+				-1.2
1,926,373	-				+1.0
1,926,439	+				-0.3
1,926,440	-				-1.0
1,926,451	-				+0.8
1,926,499	+		Sama_1582	0.19	-1.2
1,926,499	+		Sama_1582	0.19	-2.1
1,926,499	+		Sama_1582	0.19	-1.0
1,926,500	-		Sama_1582	0.20	+1.1
1,926,524	+		Sama_1582	0.28	-2.2
1,926,541	+		Sama_1582	0.34	+0.3
1,926,566	-		Sama_1582	0.43	-0.2
1,926,620	+		Sama_1582	0.61	+0.6
1,926,620	+		Sama_1582	0.61	-0.2
1,926,620	+		Sama_1582	0.61	+1.4
1,926,620	+		Sama_1582	0.61	+1.1
1,926,621	-		Sama_1582	0.62	+0.4
1,926,621	-		Sama_1582	0.62	-1.2
1,926,621	-		Sama_1582	0.62	-1.3
1,926,645	+		Sama_1582	0.70	-0.5