Strain Fitness in Shewanella amazonensis SB2B around Sama_1495

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,809,065	+		Sama_1494	0.64	-2.8
1,809,163	+		Sama_1494	0.69	-1.8
1,809,460	+		Sama_1494	0.83	-0.4
1,809,460	+		Sama_1494	0.83	-1.6
1,809,460	+		Sama_1494	0.83	-0.1
1,809,461	-		Sama_1494	0.83	-1.3
1,809,461	-		Sama_1494	0.83	-1.4
1,809,461	-		Sama_1494	0.83	-1.6
1,809,461	-		Sama_1494	0.83	-1.4
1,809,461	-		Sama_1494	0.83	-0.5
1,809,732	+				-2.5
1,809,732	+				-0.3
1,809,733	-				-2.7
1,809,827	+				-2.7
1,809,827	+				-1.1
1,809,827	+				-0.4
1,809,827	+				-2.0
1,809,827	+				-0.6
1,809,828	-				-2.0
1,809,828	-				-0.8
1,809,828	-				-1.4
1,809,828	-				-1.6
1,809,832	+				+0.8
1,809,839	+				-0.4
1,809,839	+				-0.0
1,809,840	-				-2.0
1,809,877	+				-1.4
1,809,921	-				-1.3
1,809,921	-				-2.0
1,809,921	-				-0.2
1,810,009	-				-0.8
1,810,139	-		Sama_1495	0.18	-2.0
1,810,170	+		Sama_1495	0.21	-1.4
1,810,170	+		Sama_1495	0.21	-1.6
1,810,170	+		Sama_1495	0.21	-0.7
1,810,170	+		Sama_1495	0.21	-1.6
1,810,172	+		Sama_1495	0.21	-0.5
1,810,185	-		Sama_1495	0.22	-0.6
1,810,185	-		Sama_1495	0.22	-1.1
1,810,185	-		Sama_1495	0.22	-2.0
1,810,185	-		Sama_1495	0.22	-3.1
1,810,367	+		Sama_1495	0.37	-1.8
1,810,367	+		Sama_1495	0.37	-0.8
1,810,368	-		Sama_1495	0.37	-1.0
1,810,438	-		Sama_1495	0.43	+1.6
1,810,448	-		Sama_1495	0.44	-0.4
1,810,474	+		Sama_1495	0.46	-2.0
1,810,534	+		Sama_1495	0.51	-3.0
1,810,558	+		Sama_1495	0.53	+0.8
1,810,613	+		Sama_1495	0.58	-0.6
1,810,634	+		Sama_1495	0.60	-0.8
1,810,635	-		Sama_1495	0.60	-1.1
1,810,635	-		Sama_1495	0.60	-1.6
1,810,635	-		Sama_1495	0.60	-1.7
1,810,638	+		Sama_1495	0.60	-1.7
1,810,638	+		Sama_1495	0.60	-1.8
1,810,638	+		Sama_1495	0.60	-0.7
1,810,639	-		Sama_1495	0.60	+0.2
1,810,639	-		Sama_1495	0.60	-0.8
1,810,639	-		Sama_1495	0.60	-1.7
1,810,639	-		Sama_1495	0.60	-1.5
1,810,640	+		Sama_1495	0.60	-0.4
1,810,640	+		Sama_1495	0.60	-1.4
1,810,641	-		Sama_1495	0.60	+1.2
1,810,657	-		Sama_1495	0.61	-0.8
1,810,750	-		Sama_1495	0.69	-1.8
1,810,864	-		Sama_1495	0.79	-2.8
1,810,909	+		Sama_1495	0.82	-1.6
1,810,909	+		Sama_1495	0.82	-1.4
1,810,909	+		Sama_1495	0.82	-0.8
1,810,909	+		Sama_1495	0.82	-0.7
1,810,909	+		Sama_1495	0.82	-1.6
1,810,910	-		Sama_1495	0.83	-0.5
1,810,910	-		Sama_1495	0.83	-2.3
1,810,913	+		Sama_1495	0.83	-0.4
1,810,914	-		Sama_1495	0.83	-2.5
1,810,914	-		Sama_1495	0.83	-2.5
1,811,109	+				+1.2
1,811,109	+				-1.6
1,811,109	+				-1.6
1,811,110	-				+1.2
1,811,121	+				-2.1
1,811,122	-				-1.6
1,811,122	-				+0.9
1,811,122	-				-0.8
1,811,122	-				+1.2
1,811,122	-				-0.0
1,811,144	+				-1.3
1,811,193	-				+0.6
1,811,249	-				-0.4
1,811,254	+				+1.6
1,811,275	+				-2.5
1,811,275	+				+0.5
1,811,275	+				-1.6
1,811,275	+				-0.5
1,811,276	-				-0.4
1,811,276	-				+1.2
1,811,276	-				-0.9
1,811,332	+				-1.4
1,811,332	+				-2.0
1,811,333	-				+0.4
1,811,333	-				-1.2
1,811,334	+				-3.0
1,811,334	+				+0.2
1,811,334	+				-2.6
1,811,334	+				+0.2
1,811,335	-		Sama_1496	0.10	-0.8
1,811,384	-		Sama_1496	0.21	-1.8
1,811,414	+		Sama_1496	0.28	-1.1
1,811,422	-		Sama_1496	0.30	+0.2
1,811,586	-		Sama_1496	0.67	-1.0
1,811,586	-		Sama_1496	0.67	+0.8
1,811,624	+		Sama_1496	0.75	-0.1
1,811,635	+		Sama_1496	0.78	-0.8
1,811,635	+		Sama_1496	0.78	-1.8
1,811,636	-		Sama_1496	0.78	-2.8
1,811,636	-		Sama_1496	0.78	+0.3
1,811,636	-		Sama_1496	0.78	+3.8
1,811,636	-		Sama_1496	0.78	+0.8
1,811,637	+		Sama_1496	0.78	-1.8
1,811,638	-		Sama_1496	0.78	-0.6
1,811,638	-		Sama_1496	0.78	-2.4
1,811,638	-		Sama_1496	0.78	+0.5
1,811,662	+		Sama_1496	0.84	-1.7
1,811,671	-		Sama_1496	0.86	-0.4
1,811,691	-				+0.9
1,811,792	+				-1.1
1,811,793	-				-0.4
1,811,793	-				+0.5
1,811,928	-	pflA	Sama_1497	0.18	+0.5
1,811,970	+	pflA	Sama_1497	0.24	+1.5
1,811,999	-	pflA	Sama_1497	0.28	+0.8
1,812,030	-	pflA	Sama_1497	0.32	-0.1
1,812,065	+	pflA	Sama_1497	0.37	+1.2