Strain Fitness in Shewanella amazonensis SB2B around Sama_1445

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,754,145	+				-1.7
1,754,157	+				-1.0
1,754,157	+				+0.7
1,754,184	+				+0.4
1,754,185	-				+1.5
1,754,185	-				-0.2
1,754,185	-				-0.8
1,754,185	-				+0.8
1,754,189	+				+0.6
1,754,189	+				-0.8
1,754,194	+				-0.1
1,754,197	+				+2.2
1,754,218	+				-0.1
1,754,219	-				+0.4
1,754,250	+				+0.7
1,754,251	-				-0.0
1,754,289	+				-2.2
1,754,353	+				+0.9
1,754,368	-				+0.9
1,754,380	+				+0.2
1,754,384	+				+0.8
1,754,423	-				-0.8
1,754,435	-				-0.6
1,754,435	-				+2.2
1,754,452	+		Sama_1444	0.10	-0.9
1,754,704	+		Sama_1444	0.79	-0.7
1,754,705	-		Sama_1444	0.80	-0.7
1,754,792	+				+0.1
1,754,793	-				+0.2
1,754,848	-				-1.8
1,754,848	-				-0.3
1,754,878	+				-0.1
1,754,879	-				+0.0
1,754,879	-				+1.2
1,754,879	-				-0.0
1,754,912	-				-0.8
1,754,912	-				+0.2
1,754,933	-				-2.1
1,754,959	+				-2.2
1,754,960	-				-2.1
1,755,031	-		Sama_1445	0.13	-1.2
1,755,031	-		Sama_1445	0.13	-1.2
1,755,063	+		Sama_1445	0.16	-1.5
1,755,136	-		Sama_1445	0.22	+1.0
1,755,139	+		Sama_1445	0.22	+0.2
1,755,139	+		Sama_1445	0.22	+1.5
1,755,140	-		Sama_1445	0.22	-2.6
1,755,140	-		Sama_1445	0.22	-1.8
1,755,140	-		Sama_1445	0.22	-1.2
1,755,140	-		Sama_1445	0.22	-0.1
1,755,140	-		Sama_1445	0.22	-1.0
1,755,221	+		Sama_1445	0.29	-0.5
1,755,221	+		Sama_1445	0.29	+1.8
1,755,221	+		Sama_1445	0.29	-0.4
1,755,221	+		Sama_1445	0.29	-0.1
1,755,221	+		Sama_1445	0.29	-0.8
1,755,222	-		Sama_1445	0.29	+0.7
1,755,222	-		Sama_1445	0.29	-0.1
1,755,222	-		Sama_1445	0.29	+0.2
1,755,222	-		Sama_1445	0.29	+0.2
1,755,222	-		Sama_1445	0.29	-0.4
1,755,222	-		Sama_1445	0.29	-1.8
1,755,222	-		Sama_1445	0.29	+0.1
1,755,222	-		Sama_1445	0.29	-1.8
1,755,239	-		Sama_1445	0.31	+0.2
1,755,243	+		Sama_1445	0.31	+0.0
1,755,262	+		Sama_1445	0.33	-0.0
1,755,263	-		Sama_1445	0.33	+0.2
1,755,274	+		Sama_1445	0.34	+0.6
1,755,289	+		Sama_1445	0.35	-1.2
1,755,290	-		Sama_1445	0.35	+1.8
1,755,304	+		Sama_1445	0.36	-1.9
1,755,305	-		Sama_1445	0.36	-0.6
1,755,305	-		Sama_1445	0.36	-0.2
1,755,316	+		Sama_1445	0.37	+0.1
1,755,316	+		Sama_1445	0.37	+0.3
1,755,316	+		Sama_1445	0.37	-0.8
1,755,316	+		Sama_1445	0.37	-1.2
1,755,317	-		Sama_1445	0.37	+0.6
1,755,317	-		Sama_1445	0.37	-0.4
1,755,317	-		Sama_1445	0.37	-0.9
1,755,361	+		Sama_1445	0.41	+0.5
1,755,362	-		Sama_1445	0.41	+0.1
1,755,363	+		Sama_1445	0.41	-1.8
1,755,363	+		Sama_1445	0.41	-0.6
1,755,364	-		Sama_1445	0.41	-1.9
1,755,380	+		Sama_1445	0.43	+2.5
1,755,503	+		Sama_1445	0.53	+0.3
1,755,503	+		Sama_1445	0.53	-1.6
1,755,503	+		Sama_1445	0.53	+0.4
1,755,508	+		Sama_1445	0.54	-0.8
1,755,550	-		Sama_1445	0.57	+0.2
1,755,550	-		Sama_1445	0.57	-0.1
1,755,573	-		Sama_1445	0.59	-1.0
1,755,573	-		Sama_1445	0.59	+0.5
1,755,573	-		Sama_1445	0.59	-3.5
1,755,588	+		Sama_1445	0.61	-0.5
1,755,588	+		Sama_1445	0.61	+0.2
1,755,588	+		Sama_1445	0.61	+0.6
1,755,588	+		Sama_1445	0.61	-2.2
1,755,588	+		Sama_1445	0.61	-1.8
1,755,588	+		Sama_1445	0.61	-0.7
1,755,588	+		Sama_1445	0.61	+0.9
1,755,588	+		Sama_1445	0.61	-1.1
1,755,589	-		Sama_1445	0.61	-0.9
1,755,589	-		Sama_1445	0.61	-0.7
1,755,599	+		Sama_1445	0.62	+1.8
1,755,599	+		Sama_1445	0.62	+0.2
1,755,599	+		Sama_1445	0.62	+2.4
1,755,600	-		Sama_1445	0.62	-1.3
1,755,600	-		Sama_1445	0.62	-0.4
1,755,616	+		Sama_1445	0.63	-1.4
1,755,660	+		Sama_1445	0.67	-0.6
1,755,660	+		Sama_1445	0.67	+0.9
1,755,666	+		Sama_1445	0.67	+0.6
1,755,667	-		Sama_1445	0.68	+0.1
1,755,707	+		Sama_1445	0.71	-0.0
1,755,712	-		Sama_1445	0.71	+1.1
1,755,789	+		Sama_1445	0.78	-1.4
1,755,807	+		Sama_1445	0.80	-1.2
1,755,807	+		Sama_1445	0.80	+0.4
1,755,807	+		Sama_1445	0.80	-0.1
1,755,812	-		Sama_1445	0.80	+0.6
1,755,812	-		Sama_1445	0.80	-0.9
1,755,812	-		Sama_1445	0.80	-0.1
1,755,839	+		Sama_1445	0.82	-1.4
1,755,843	+		Sama_1445	0.83	+1.3
1,755,843	+		Sama_1445	0.83	-0.8
1,755,843	+		Sama_1445	0.83	-0.0
1,755,843	+		Sama_1445	0.83	+0.2
1,755,843	+		Sama_1445	0.83	-0.9
1,755,843	+		Sama_1445	0.83	-1.4
1,755,843	+		Sama_1445	0.83	+0.2
1,755,843	+		Sama_1445	0.83	+0.2
1,755,844	-		Sama_1445	0.83	+0.4
1,755,844	-		Sama_1445	0.83	-0.4
1,755,861	+		Sama_1445	0.84	-0.0
1,755,925	+		Sama_1445	0.90	-0.3
1,755,925	+		Sama_1445	0.90	+0.2
1,755,926	-		Sama_1445	0.90	-0.5
1,755,942	-				-1.6
1,755,950	+				-0.2
1,755,952	+				-2.4
1,755,952	+				-0.6
1,756,022	+				-1.1
1,756,023	-				-0.2
1,756,041	+				-0.4
1,756,103	+				-0.2
1,756,108	+				-1.4
1,756,109	-				+0.4
1,756,113	+				+1.8
1,756,114	-				-1.9
1,756,142	+				-1.5
1,756,142	+				-0.9
1,756,142	+				+1.1
1,756,178	+				+0.1
1,756,179	-				-0.1
1,756,212	+				+2.8
1,756,213	-				-1.9
1,756,215	+				-0.6
1,756,216	-				+1.2
1,756,292	+				-2.4
1,756,300	+				+0.1
1,756,300	+				-2.4
1,756,300	+				-0.5
1,756,300	+				+1.0
1,756,300	+				-0.4
1,756,301	-				-0.5
1,756,301	-				+0.6
1,756,304	+				-0.3
1,756,305	-				-0.8
1,756,305	-				+1.0
1,756,305	-				+0.6
1,756,311	+				+0.3
1,756,312	-				-0.9
1,756,312	-				+0.1
1,756,315	+				+0.3
1,756,315	+				+0.6
1,756,325	+				-0.3
1,756,334	+				+0.1
1,756,406	+				+1.2
1,756,417	+				+0.1
1,756,417	+				+1.2
1,756,417	+				+1.0
1,756,420	+				+0.2
1,756,420	+				-0.0
1,756,420	+				+1.8
1,756,435	+				-0.1
1,756,435	+				+0.3
1,756,529	+		Sama_1446	0.19	+0.6
1,756,582	+		Sama_1446	0.28	+1.9
1,756,599	+		Sama_1446	0.30	-0.7
1,756,600	-		Sama_1446	0.30	-0.2
1,756,616	+		Sama_1446	0.33	-1.1
1,756,629	+		Sama_1446	0.35	+1.2
1,756,629	+		Sama_1446	0.35	-0.1
1,756,640	+		Sama_1446	0.37	+0.1
1,756,640	+		Sama_1446	0.37	-1.1
1,756,714	+		Sama_1446	0.48	-2.5
1,756,798	+		Sama_1446	0.62	-1.9
1,756,798	+		Sama_1446	0.62	-1.5
1,756,798	+		Sama_1446	0.62	+0.0
1,756,953	+		Sama_1446	0.86	-0.8