Strain Fitness in Shewanella amazonensis SB2B around Sama_1354

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,641,955	+		Sama_1353	0.11	+1.3
1,641,979	+		Sama_1353	0.13	-1.7
1,642,043	-		Sama_1353	0.20	-1.9
1,642,049	-		Sama_1353	0.20	-1.2
1,642,051	+		Sama_1353	0.21	+0.9
1,642,117	+		Sama_1353	0.27	-0.5
1,642,117	+		Sama_1353	0.27	+0.7
1,642,118	-		Sama_1353	0.27	-0.5
1,642,118	-		Sama_1353	0.27	-0.0
1,642,118	-		Sama_1353	0.27	-0.7
1,642,119	+		Sama_1353	0.27	-1.2
1,642,120	-		Sama_1353	0.27	-0.3
1,642,172	-		Sama_1353	0.32	+1.3
1,642,172	-		Sama_1353	0.32	+0.3
1,642,223	-		Sama_1353	0.37	-0.7
1,642,246	+		Sama_1353	0.40	+1.0
1,642,246	+		Sama_1353	0.40	-0.8
1,642,331	-		Sama_1353	0.48	-0.2
1,642,421	-		Sama_1353	0.57	-1.7
1,642,421	-		Sama_1353	0.57	-0.3
1,642,605	+		Sama_1353	0.75	+0.2
1,642,628	-		Sama_1353	0.77	-0.0
1,642,759	+		Sama_1353	0.90	+0.7
1,642,778	-				-0.4
1,642,865	+				+0.5
1,642,869	-				+1.1
1,642,869	-				-1.9
1,642,869	-				+0.1
1,642,946	+				+0.1
1,642,967	+				-0.9
1,642,968	-				-0.1
1,642,980	-				-1.5
1,642,980	-				-0.8
1,643,011	+		Sama_1354	0.14	+0.7
1,643,012	-		Sama_1354	0.14	-0.7
1,643,137	-		Sama_1354	0.40	-0.0
1,643,166	+		Sama_1354	0.46	-1.4
1,643,167	-		Sama_1354	0.46	+0.3
1,643,167	-		Sama_1354	0.46	-0.8
1,643,170	+		Sama_1354	0.47	-0.3
1,643,204	+		Sama_1354	0.54	-0.7
1,643,241	+		Sama_1354	0.61	+2.3
1,643,302	+		Sama_1354	0.74	-0.7
1,643,302	+		Sama_1354	0.74	-0.7
1,643,410	+				+0.3
1,643,431	+				+0.8
1,643,431	+				+1.2
1,643,432	-				-0.7
1,643,432	-				+1.2
1,643,432	-				-0.7
1,643,432	-				-0.0
1,643,435	+				-1.9
1,643,447	+				-0.1
1,643,455	+				+1.2
1,643,475	-				+0.7
1,643,548	+				+1.3
1,643,602	-				+0.2
1,643,796	+				-1.7
1,643,797	-				-0.3
1,643,797	-				+0.5
1,643,798	+				+1.3
1,643,798	+				-0.0
1,643,798	+				-1.0
1,643,798	+				+0.8
1,643,798	+				+0.9
1,643,799	-				+0.0
1,643,799	-				-1.3
1,643,799	-				-0.9
1,643,850	+				-0.5
1,643,893	-		Sama_1355	0.14	+1.0
1,643,926	+		Sama_1355	0.18	-1.0
1,643,926	+		Sama_1355	0.18	+0.2
1,643,976	-		Sama_1355	0.23	-1.2
1,643,976	-		Sama_1355	0.23	-1.6
1,643,989	+		Sama_1355	0.24	-0.1
1,643,989	+		Sama_1355	0.24	+0.3
1,643,990	-		Sama_1355	0.24	+0.3
1,643,996	-		Sama_1355	0.25	+0.3
1,643,996	-		Sama_1355	0.25	-0.7
1,644,009	-		Sama_1355	0.26	-0.7
1,644,096	+		Sama_1355	0.35	+0.3
1,644,096	+		Sama_1355	0.35	-1.3
1,644,097	-		Sama_1355	0.35	-0.2
1,644,097	-		Sama_1355	0.35	+0.7
1,644,125	+		Sama_1355	0.38	-0.8
1,644,125	+		Sama_1355	0.38	-2.5
1,644,125	+		Sama_1355	0.38	-0.3
1,644,125	+		Sama_1355	0.38	+0.2
1,644,125	+		Sama_1355	0.38	-0.3
1,644,125	+		Sama_1355	0.38	+1.1
1,644,125	+		Sama_1355	0.38	+0.1
1,644,126	-		Sama_1355	0.38	+0.7
1,644,126	-		Sama_1355	0.38	-0.9
1,644,126	-		Sama_1355	0.38	-0.2
1,644,126	-		Sama_1355	0.38	+1.5
1,644,126	-		Sama_1355	0.38	-1.6
1,644,126	-		Sama_1355	0.38	-2.4
1,644,126	-		Sama_1355	0.38	-0.3
1,644,183	+		Sama_1355	0.44	-0.5
1,644,183	+		Sama_1355	0.44	-0.5
1,644,212	+		Sama_1355	0.47	-1.2
1,644,212	+		Sama_1355	0.47	+1.6
1,644,235	-		Sama_1355	0.50	-0.1
1,644,244	-		Sama_1355	0.51	-1.7
1,644,244	-		Sama_1355	0.51	-0.8
1,644,306	+		Sama_1355	0.57	+1.0
1,644,361	-		Sama_1355	0.63	-1.0
1,644,412	+		Sama_1355	0.68	+1.0
1,644,413	-		Sama_1355	0.68	+0.3