Strain Fitness in Shewanella amazonensis SB2B around Sama_1326

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,614,640	-		Sama_1325	0.53	-1.9
1,614,742	+		Sama_1325	0.61	-0.8
1,614,742	+		Sama_1325	0.61	-1.3
1,614,743	-		Sama_1325	0.61	-1.0
1,614,743	-		Sama_1325	0.61	-2.0
1,614,767	+		Sama_1325	0.62	-1.0
1,614,847	+		Sama_1325	0.68	-2.0
1,614,847	+		Sama_1325	0.68	-1.0
1,614,847	+		Sama_1325	0.68	-1.7
1,614,855	-		Sama_1325	0.69	-2.7
1,614,855	-		Sama_1325	0.69	-1.8
1,614,857	+		Sama_1325	0.69	-0.6
1,614,857	+		Sama_1325	0.69	-2.0
1,614,857	+		Sama_1325	0.69	-1.7
1,614,857	+		Sama_1325	0.69	-3.4
1,614,857	+		Sama_1325	0.69	+0.7
1,614,857	+		Sama_1325	0.69	-0.0
1,614,858	-		Sama_1325	0.69	-2.0
1,614,858	-		Sama_1325	0.69	-2.4
1,614,858	-		Sama_1325	0.69	-0.0
1,614,858	-		Sama_1325	0.69	-2.5
1,614,862	-		Sama_1325	0.69	-1.0
1,614,870	-		Sama_1325	0.70	-1.0
1,614,896	+		Sama_1325	0.72	-0.5
1,614,945	-		Sama_1325	0.75	-1.4
1,614,982	-		Sama_1325	0.78	-2.8
1,615,114	-		Sama_1325	0.88	-1.5
1,615,230	+				-1.8
1,615,231	-				-1.9
1,615,231	-				-1.5
1,615,249	+				-2.0
1,615,249	+				+0.3
1,615,250	-				+0.3
1,615,260	+				-0.8
1,615,261	-				-1.5
1,615,264	+				-1.9
1,615,273	+				-2.8
1,615,273	+				-2.0
1,615,273	+				-1.1
1,615,274	-				+1.3
1,615,274	-				-1.0
1,615,284	+				-1.5
1,615,284	+				-2.5
1,615,285	-				-1.7
1,615,285	-				-0.3
1,615,306	+				-1.3
1,615,306	+				-0.7
1,615,306	+				-1.0
1,615,306	+				-1.7
1,615,307	-				-1.1
1,615,307	-				-2.1
1,615,307	-				-1.9
1,615,307	-				-2.2
1,615,307	-				-1.2
1,615,313	+				-1.7
1,615,313	+				-1.1
1,615,314	-				-1.1
1,615,318	+				-1.5
1,615,385	+				-1.3
1,615,386	-				-0.8
1,615,399	+				-2.0
1,615,428	+				-2.9
1,615,429	-				-0.0
1,615,429	-				+0.1
1,615,433	-				+0.3
1,615,478	+				-3.0
1,615,478	+				+0.5
1,615,478	+				+1.1
1,615,479	-				+0.7
1,615,549	+				-1.0
1,615,560	-				-0.0
1,615,560	-				+0.3
1,615,570	+				-1.3
1,615,570	+				+0.3
1,615,595	+				-1.7
1,615,596	-				-0.3
1,615,623	+				+0.3
1,615,662	+				-0.5
1,615,710	+				-0.1
1,615,710	+				+0.8
1,615,748	+		Sama_1326	0.12	-0.0
1,615,749	-		Sama_1326	0.12	+0.1
1,615,770	+		Sama_1326	0.14	-0.1
1,615,779	-		Sama_1326	0.15	+0.1
1,615,794	+		Sama_1326	0.17	-0.3
1,615,794	+		Sama_1326	0.17	+0.2
1,615,795	-		Sama_1326	0.17	-0.6
1,615,871	+		Sama_1326	0.24	-1.0
1,615,871	+		Sama_1326	0.24	-1.4
1,615,871	+		Sama_1326	0.24	-0.7
1,615,872	-		Sama_1326	0.24	+1.9
1,615,872	-		Sama_1326	0.24	+1.0
1,615,872	-		Sama_1326	0.24	-0.5
1,615,872	-		Sama_1326	0.24	+0.5
1,615,895	+		Sama_1326	0.26	+0.1
1,615,895	+		Sama_1326	0.26	+0.8
1,615,949	+		Sama_1326	0.32	-1.9
1,615,949	+		Sama_1326	0.32	+0.3
1,615,950	-		Sama_1326	0.32	-1.0
1,615,950	-		Sama_1326	0.32	-0.9
1,615,962	+		Sama_1326	0.33	-0.7
1,615,962	+		Sama_1326	0.33	+0.6
1,615,962	+		Sama_1326	0.33	+0.2
1,615,970	+		Sama_1326	0.34	+0.1
1,615,970	+		Sama_1326	0.34	+0.2
1,616,004	-		Sama_1326	0.37	+0.7
1,616,074	-		Sama_1326	0.44	+0.3
1,616,139	+		Sama_1326	0.50	+0.3
1,616,226	+		Sama_1326	0.59	-1.3
1,616,226	+		Sama_1326	0.59	-0.2
1,616,226	+		Sama_1326	0.59	+0.6
1,616,226	+		Sama_1326	0.59	+0.7
1,616,227	-		Sama_1326	0.59	+0.6
1,616,272	+		Sama_1326	0.63	+0.7
1,616,360	+		Sama_1326	0.72	+0.4
1,616,360	+		Sama_1326	0.72	+0.5
1,616,568	+				+0.3
1,616,631	+				-0.6
1,616,631	+				+1.1
1,616,631	+				+1.2
1,616,647	+				-0.3
1,616,647	+				+0.7
1,616,683	+				-1.3
1,616,684	-				+0.0
1,616,729	+				+0.2
1,616,729	+				-1.0
1,616,729	+				+0.2
1,616,729	+				-0.7
1,616,733	+				-0.0
1,616,734	-				+0.5
1,616,829	+		Sama_1327	0.13	+0.7
1,616,829	+		Sama_1327	0.13	+2.3
1,616,853	+		Sama_1327	0.17	+0.7
1,616,853	+		Sama_1327	0.17	-1.1
1,616,853	+		Sama_1327	0.17	+0.2
1,616,854	-		Sama_1327	0.18	-0.7
1,616,854	-		Sama_1327	0.18	-0.4
1,616,854	-		Sama_1327	0.18	-0.5
1,616,879	-		Sama_1327	0.22	+0.6
1,616,883	+		Sama_1327	0.23	-2.6
1,616,927	+		Sama_1327	0.31	+1.6
1,616,927	+		Sama_1327	0.31	-2.7
1,616,927	+		Sama_1327	0.31	-0.3
1,616,931	+		Sama_1327	0.32	+1.1
1,616,931	+		Sama_1327	0.32	+1.1
1,616,931	+		Sama_1327	0.32	-0.3
1,616,931	+		Sama_1327	0.32	-0.3
1,616,931	+		Sama_1327	0.32	+0.7
1,616,931	+		Sama_1327	0.32	-0.6
1,616,931	+		Sama_1327	0.32	+1.3
1,616,931	+		Sama_1327	0.32	+0.9
1,616,931	+		Sama_1327	0.32	-0.0
1,616,931	+		Sama_1327	0.32	+0.9
1,616,932	-		Sama_1327	0.32	+0.0
1,616,932	-		Sama_1327	0.32	+0.2
1,616,985	+		Sama_1327	0.42	-0.1
1,616,985	+		Sama_1327	0.42	-0.3
1,617,018	+		Sama_1327	0.48	+1.4
1,617,018	+		Sama_1327	0.48	-0.7
1,617,018	+		Sama_1327	0.48	-0.1
1,617,018	+		Sama_1327	0.48	-0.9
1,617,019	-		Sama_1327	0.48	-0.0
1,617,062	+		Sama_1327	0.56	-0.1
1,617,063	-		Sama_1327	0.56	+0.5
1,617,063	-		Sama_1327	0.56	-1.2
1,617,063	-		Sama_1327	0.56	+0.5
1,617,144	+		Sama_1327	0.71	-0.0
1,617,145	-		Sama_1327	0.71	+0.7
1,617,145	-		Sama_1327	0.71	+0.1
1,617,209	-		Sama_1327	0.83	-0.0
1,617,275	+				-0.2
1,617,275	+				+0.7
1,617,275	+				+0.3
1,617,275	+				-0.7
1,617,276	-				-0.4
1,617,276	-				-0.1
1,617,354	+				+0.1
1,617,354	+				-1.0
1,617,355	-				+1.1
1,617,373	+				-1.6
1,617,375	+				+0.4
1,617,375	+				+1.1
1,617,375	+				-0.3
1,617,375	+				-1.3
1,617,376	-				-0.9
1,617,376	-				+0.7
1,617,382	+				+0.3
1,617,382	+				-1.3
1,617,383	-				-1.0
1,617,406	+				-0.3
1,617,514	-				+0.5
1,617,514	-				+0.3
1,617,599	+				-0.8
1,617,620	+				-0.6
1,617,632	-				+1.2
1,617,632	-				-0.4