Strain Fitness in Shewanella amazonensis SB2B around Sama_1320

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,603,824	+		Sama_1319	0.43	+1.1
1,603,882	-		Sama_1319	0.48	-2.0
1,603,882	-		Sama_1319	0.48	-0.7
1,603,882	-		Sama_1319	0.48	-0.3
1,603,882	-		Sama_1319	0.48	-1.9
1,603,886	+		Sama_1319	0.48	-0.5
1,603,886	+		Sama_1319	0.48	-1.5
1,603,887	-		Sama_1319	0.48	-1.2
1,603,890	+		Sama_1319	0.48	+0.8
1,603,891	-		Sama_1319	0.48	-2.3
1,603,891	-		Sama_1319	0.48	+0.3
1,603,891	-		Sama_1319	0.48	-0.3
1,604,143	+		Sama_1319	0.68	-0.2
1,604,144	-		Sama_1319	0.68	+0.1
1,604,190	-		Sama_1319	0.71	-0.7
1,604,286	-		Sama_1319	0.78	-1.5
1,604,317	+		Sama_1319	0.81	-0.7
1,604,365	-		Sama_1319	0.84	+1.0
1,604,404	-		Sama_1319	0.87	-0.3
1,604,404	-		Sama_1319	0.87	-2.4
1,604,407	+		Sama_1319	0.88	+0.9
1,604,407	+		Sama_1319	0.88	-1.7
1,604,407	+		Sama_1319	0.88	-1.1
1,604,408	-		Sama_1319	0.88	-0.4
1,604,408	-		Sama_1319	0.88	-1.0
1,604,408	-		Sama_1319	0.88	-0.1
1,604,408	-		Sama_1319	0.88	+0.6
1,604,408	-		Sama_1319	0.88	+1.3
1,604,410	-		Sama_1319	0.88	+1.1
1,604,410	-		Sama_1319	0.88	+3.1
1,604,410	-		Sama_1319	0.88	-0.2
1,604,417	-		Sama_1319	0.88	+0.9
1,604,445	-				-0.1
1,604,445	-				-0.5
1,604,479	-				+0.3
1,604,479	-				-0.9
1,604,522	-				-0.0
1,604,653	-				-0.3
1,604,682	+				-1.3
1,604,695	+				+2.1
1,604,698	+				+0.8
1,604,708	-				-1.0
1,604,722	+				+0.6
1,604,722	+				-0.0
1,604,722	+				+1.0
1,604,722	+				+0.2
1,604,733	+				-0.2
1,604,733	+				+1.7
1,604,733	+				-1.0
1,604,735	+				-0.1
1,604,735	+				-0.8
1,604,735	+				-0.5
1,604,735	+				-0.4
1,604,735	+				+0.1
1,604,736	-				+0.3
1,604,736	-				-0.7
1,604,736	-				-1.1
1,604,739	+				-0.5
1,604,739	+				+1.8
1,604,739	+				+1.3
1,604,739	+				-0.6
1,604,740	-				+0.6
1,604,740	-				-0.3
1,604,755	+				+0.5
1,604,755	+				-0.0
1,604,755	+				+0.4
1,604,755	+				+0.5
1,604,759	+				-1.3
1,604,760	-				+1.5
1,604,765	-				-2.0
1,604,768	+				+0.9
1,604,774	-				+0.7
1,604,810	-				-0.6
1,604,836	+				+0.5
1,604,837	-				-0.7
1,604,837	-				-1.3
1,604,837	-				+0.2
1,604,839	+				+0.7
1,604,839	+				+0.4
1,604,842	+				-0.7
1,604,843	-				+1.9
1,604,873	+				+0.6
1,604,894	+				-1.0
1,604,915	+				-0.1
1,604,915	+				-3.2
1,604,930	+				-0.4
1,604,930	+				-0.3
1,604,932	+				+0.1
1,604,932	+				+0.6
1,604,933	-				-0.5
1,604,939	+				+1.0
1,604,939	+				-0.4
1,604,965	+				+0.3
1,604,965	+				+3.3
1,604,965	+				-2.3
1,604,965	+				-0.3
1,604,966	-				+0.6
1,604,966	-				-1.3
1,604,966	-				+1.6
1,604,966	-				+1.1
1,604,969	+				-1.3
1,604,969	+				-0.3
1,604,969	+				-1.7
1,604,970	-				+0.3
1,604,970	-				-0.7
1,604,970	-				-0.2
1,605,051	-		Sama_1320	0.11	-0.4
1,605,061	+		Sama_1320	0.11	-0.6
1,605,061	+		Sama_1320	0.11	+0.5
1,605,071	+		Sama_1320	0.11	-0.0
1,605,119	+		Sama_1320	0.13	+0.9
1,605,119	+		Sama_1320	0.13	+0.7
1,605,120	-		Sama_1320	0.13	-0.6
1,605,120	-		Sama_1320	0.13	-0.0
1,605,120	-		Sama_1320	0.13	+0.1
1,605,120	-		Sama_1320	0.13	+1.3
1,605,140	+		Sama_1320	0.14	+1.6
1,605,140	+		Sama_1320	0.14	+0.6
1,605,207	-		Sama_1320	0.17	-0.3
1,605,267	-		Sama_1320	0.19	+0.9
1,605,341	+		Sama_1320	0.22	-2.1
1,605,342	-		Sama_1320	0.22	+0.7
1,605,362	+		Sama_1320	0.23	+0.1
1,605,362	+		Sama_1320	0.23	+0.6
1,605,362	+		Sama_1320	0.23	+0.3
1,605,363	-		Sama_1320	0.23	+0.8
1,605,363	-		Sama_1320	0.23	-0.7
1,605,363	-		Sama_1320	0.23	-1.1
1,605,408	-		Sama_1320	0.25	-1.7
1,605,437	+		Sama_1320	0.26	+0.2
1,605,441	+		Sama_1320	0.26	-0.8
1,605,441	+		Sama_1320	0.26	+1.1
1,605,441	+		Sama_1320	0.26	+1.6
1,605,441	+		Sama_1320	0.26	-1.4
1,605,442	-		Sama_1320	0.26	+0.2
1,605,474	-		Sama_1320	0.28	+1.3
1,605,596	+		Sama_1320	0.33	-0.7
1,605,596	+		Sama_1320	0.33	-0.6
1,605,596	+		Sama_1320	0.33	+0.1
1,605,596	+		Sama_1320	0.33	-1.9
1,605,612	-		Sama_1320	0.33	+0.1
1,605,718	+		Sama_1320	0.38	-0.3
1,605,718	+		Sama_1320	0.38	-1.7
1,605,718	+		Sama_1320	0.38	-0.3
1,605,718	+		Sama_1320	0.38	-0.4
1,605,718	+		Sama_1320	0.38	+1.0
1,605,718	+		Sama_1320	0.38	+1.6
1,605,718	+		Sama_1320	0.38	-0.1
1,605,718	+		Sama_1320	0.38	-0.7
1,605,718	+		Sama_1320	0.38	+0.8
1,605,718	+		Sama_1320	0.38	+0.1
1,605,719	-		Sama_1320	0.38	-1.0
1,605,719	-		Sama_1320	0.38	+0.7
1,605,719	-		Sama_1320	0.38	-2.0
1,605,719	-		Sama_1320	0.38	-2.7
1,605,719	-		Sama_1320	0.38	+0.1
1,605,719	-		Sama_1320	0.38	-0.5
1,605,723	-		Sama_1320	0.38	-1.8
1,605,723	-		Sama_1320	0.38	+0.6
1,605,731	+		Sama_1320	0.38	-0.3
1,605,731	+		Sama_1320	0.38	-0.3
1,605,731	+		Sama_1320	0.38	-0.3
1,605,731	+		Sama_1320	0.38	+0.8
1,605,732	-		Sama_1320	0.38	-1.1
1,605,762	+		Sama_1320	0.39	+0.1
1,605,762	+		Sama_1320	0.39	-0.1
1,605,762	+		Sama_1320	0.39	-0.2
1,605,762	+		Sama_1320	0.39	+0.5
1,605,762	+		Sama_1320	0.39	-0.1
1,605,762	+		Sama_1320	0.39	-2.0
1,605,794	+		Sama_1320	0.41	+0.5
1,605,794	+		Sama_1320	0.41	-0.9
1,605,795	-		Sama_1320	0.41	-1.7
1,605,795	-		Sama_1320	0.41	+0.3
1,605,814	+		Sama_1320	0.42	-0.8
1,605,814	+		Sama_1320	0.42	-0.1
1,605,814	+		Sama_1320	0.42	+0.1
1,605,814	+		Sama_1320	0.42	+0.0
1,605,814	+		Sama_1320	0.42	+0.3
1,605,815	-		Sama_1320	0.42	-1.5
1,605,815	-		Sama_1320	0.42	-0.6
1,605,815	-		Sama_1320	0.42	+0.8
1,605,815	-		Sama_1320	0.42	+0.2
1,605,815	-		Sama_1320	0.42	+1.3
1,605,815	-		Sama_1320	0.42	-0.3
1,605,875	+		Sama_1320	0.44	+0.1
1,605,875	+		Sama_1320	0.44	+1.7
1,605,875	+		Sama_1320	0.44	-1.1
1,605,875	+		Sama_1320	0.44	+0.2
1,605,905	+		Sama_1320	0.45	-0.9
1,605,905	+		Sama_1320	0.45	+1.3
1,605,905	+		Sama_1320	0.45	+0.9
1,605,911	+		Sama_1320	0.45	-1.5
1,605,958	+		Sama_1320	0.47	+0.7
1,605,958	+		Sama_1320	0.47	-1.3
1,605,961	+		Sama_1320	0.47	-0.6
1,605,961	+		Sama_1320	0.47	-0.3
1,605,961	+		Sama_1320	0.47	+0.2
1,605,961	+		Sama_1320	0.47	+0.5
1,605,961	+		Sama_1320	0.47	-0.4
1,605,961	+		Sama_1320	0.47	-0.7
1,605,961	+		Sama_1320	0.47	-0.2
1,605,962	-		Sama_1320	0.48	+0.7
1,605,962	-		Sama_1320	0.48	+0.6
1,605,962	-		Sama_1320	0.48	+1.3
1,605,965	+		Sama_1320	0.48	+0.6
1,605,965	+		Sama_1320	0.48	-1.5
1,605,965	+		Sama_1320	0.48	+1.6
1,605,965	+		Sama_1320	0.48	-1.6
1,605,965	+		Sama_1320	0.48	-0.3
1,605,966	-		Sama_1320	0.48	-0.7
1,605,966	-		Sama_1320	0.48	+0.4
1,606,036	+		Sama_1320	0.51	+0.9
1,606,037	-		Sama_1320	0.51	-0.5
1,606,056	-		Sama_1320	0.51	-0.0
1,606,087	+		Sama_1320	0.53	+0.2
1,606,087	+		Sama_1320	0.53	+1.3
1,606,088	-		Sama_1320	0.53	+1.0
1,606,109	+		Sama_1320	0.53	+1.6
1,606,109	+		Sama_1320	0.53	-2.4
1,606,110	-		Sama_1320	0.54	-1.6
1,606,121	+		Sama_1320	0.54	-0.1
1,606,184	+		Sama_1320	0.57	+1.7
1,606,184	+		Sama_1320	0.57	+1.2
1,606,216	+		Sama_1320	0.58	-1.5
1,606,228	+		Sama_1320	0.58	-0.6
1,606,228	+		Sama_1320	0.58	-3.0
1,606,229	-		Sama_1320	0.58	+1.0
1,606,229	-		Sama_1320	0.58	+0.1
1,606,229	-		Sama_1320	0.58	-0.3
1,606,250	+		Sama_1320	0.59	+1.2
1,606,250	+		Sama_1320	0.59	+0.7
1,606,298	+		Sama_1320	0.61	+0.7
1,606,355	-		Sama_1320	0.63	+0.1
1,606,355	-		Sama_1320	0.63	-1.9
1,606,368	-		Sama_1320	0.64	-0.0
1,606,376	+		Sama_1320	0.64	+0.1
1,606,376	+		Sama_1320	0.64	+0.6
1,606,388	+		Sama_1320	0.65	+1.0
1,606,389	-		Sama_1320	0.65	+0.1
1,606,389	-		Sama_1320	0.65	-0.6
1,606,389	-		Sama_1320	0.65	+0.4
1,606,396	+		Sama_1320	0.65	-0.4
1,606,397	-		Sama_1320	0.65	-1.0
1,606,484	-		Sama_1320	0.69	-0.2
1,606,500	+		Sama_1320	0.69	-0.8
1,606,503	+		Sama_1320	0.69	-0.9
1,606,512	+		Sama_1320	0.70	-0.8
1,606,512	+		Sama_1320	0.70	-0.5
1,606,513	-		Sama_1320	0.70	-1.3
1,606,513	-		Sama_1320	0.70	+0.7
1,606,513	-		Sama_1320	0.70	+0.7
1,606,558	+		Sama_1320	0.72	+0.9
1,606,580	+		Sama_1320	0.73	+0.2
1,606,581	-		Sama_1320	0.73	-0.1
1,606,627	+		Sama_1320	0.74	+1.3
1,606,628	-		Sama_1320	0.75	+0.2
1,606,628	-		Sama_1320	0.75	+0.7
1,606,628	-		Sama_1320	0.75	-0.0
1,606,656	+		Sama_1320	0.76	-1.0
1,606,656	+		Sama_1320	0.76	+1.0
1,606,656	+		Sama_1320	0.76	+0.7
1,606,656	+		Sama_1320	0.76	-1.9
1,606,686	-		Sama_1320	0.77	-0.5
1,606,699	+		Sama_1320	0.77	+1.3
1,606,699	+		Sama_1320	0.77	-0.7
1,606,699	+		Sama_1320	0.77	-0.1
1,606,700	-		Sama_1320	0.77	+1.1
1,606,790	+		Sama_1320	0.81	+0.2
1,606,797	+		Sama_1320	0.81	+0.3
1,606,797	+		Sama_1320	0.81	+0.6
1,606,797	+		Sama_1320	0.81	+0.8
1,606,798	-		Sama_1320	0.81	-0.9
1,606,798	-		Sama_1320	0.81	+0.1
1,606,798	-		Sama_1320	0.81	+1.7
1,606,980	-		Sama_1320	0.89	-0.7
1,606,986	-		Sama_1320	0.89	+0.3
1,607,051	+				+1.5
1,607,051	+				+0.6
1,607,051	+				+1.1
1,607,101	-				+0.3
1,607,101	-				-1.5
1,607,118	-				-0.3
1,607,121	+				-2.1
1,607,121	+				+1.0
1,607,121	+				+1.6
1,607,121	+				-0.0
1,607,121	+				-1.3
1,607,121	+				+1.4
1,607,122	-				-0.1
1,607,122	-				+0.1
1,607,122	-				-0.0
1,607,122	-				-0.4
1,607,122	-				-1.7
1,607,122	-				-0.2
1,607,198	+				-0.0
1,607,198	+				+1.3
1,607,227	+				+0.2
1,607,227	+				-1.3
1,607,227	+				-0.9
1,607,227	+				-0.1
1,607,250	+				+1.5
1,607,250	+				-1.4
1,607,250	+				-0.0
1,607,251	-				-2.3
1,607,251	-				-0.7
1,607,251	-				+0.7
1,607,295	+				-0.4
1,607,296	-				-0.1
1,607,315	-				-1.0
1,607,389	-				-1.7
1,607,389	-				+1.3
1,607,396	-				-1.0
1,607,575	-				+1.1
1,607,575	-				-0.5
1,607,575	-				+0.5
1,607,601	-				-0.7
1,607,670	+		Sama_1321	0.13	+0.5
1,607,670	+		Sama_1321	0.13	-0.2
1,607,774	-		Sama_1321	0.21	-1.9
1,607,774	-		Sama_1321	0.21	-1.4
1,607,778	+		Sama_1321	0.21	-2.8
1,607,816	+		Sama_1321	0.24	-2.0
1,607,817	-		Sama_1321	0.24	+0.3
1,607,817	-		Sama_1321	0.24	-1.5
1,607,817	-		Sama_1321	0.24	-1.9
1,607,822	-		Sama_1321	0.24	+1.1
1,607,822	-		Sama_1321	0.24	-0.1
1,607,822	-		Sama_1321	0.24	-0.7
1,607,822	-		Sama_1321	0.24	+0.3
1,607,822	-		Sama_1321	0.24	+0.7
1,607,862	+		Sama_1321	0.27	-0.1
1,607,863	-		Sama_1321	0.27	-2.0
1,607,863	-		Sama_1321	0.27	-0.6
1,607,877	-		Sama_1321	0.29	+0.2
1,607,895	+		Sama_1321	0.30	-0.7
1,607,896	-		Sama_1321	0.30	-0.3
1,607,896	-		Sama_1321	0.30	-2.6
1,607,914	+		Sama_1321	0.31	+0.3
1,607,914	+		Sama_1321	0.31	-0.9
1,607,914	+		Sama_1321	0.31	+0.5
1,607,922	+		Sama_1321	0.32	-0.4
1,607,934	+		Sama_1321	0.33	+0.7
1,607,934	+		Sama_1321	0.33	-1.7
1,607,935	-		Sama_1321	0.33	+0.5
1,607,935	-		Sama_1321	0.33	-0.7
1,607,964	-		Sama_1321	0.35	-1.5
1,607,968	+		Sama_1321	0.35	+0.6
1,607,968	+		Sama_1321	0.35	-0.1
1,607,968	+		Sama_1321	0.35	+1.0
1,607,968	+		Sama_1321	0.35	-0.1
1,607,968	+		Sama_1321	0.35	-1.3
1,607,968	+		Sama_1321	0.35	-0.4
1,607,969	-		Sama_1321	0.35	-0.1
1,608,041	-		Sama_1321	0.41	-2.7
1,608,041	-		Sama_1321	0.41	-1.0
1,608,102	-		Sama_1321	0.45	-0.7
1,608,124	+		Sama_1321	0.47	-2.6
1,608,124	+		Sama_1321	0.47	-0.3
1,608,125	-		Sama_1321	0.47	-0.3
1,608,125	-		Sama_1321	0.47	-0.4
1,608,199	+		Sama_1321	0.53	+0.0
1,608,200	-		Sama_1321	0.53	-0.3
1,608,222	+		Sama_1321	0.54	-0.5
1,608,223	-		Sama_1321	0.54	-0.4
1,608,244	+		Sama_1321	0.56	+0.8