Strain Fitness in Shewanella amazonensis SB2B around Sama_1313

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,595,181	+		Sama_1311	0.47	-1.0
1,595,221	+		Sama_1311	0.59	+0.3
1,595,481	-	recR	Sama_1312	0.18	-0.9
1,595,552	+	recR	Sama_1312	0.30	-0.9
1,595,644	+	recR	Sama_1312	0.46	-0.8
1,595,645	-	recR	Sama_1312	0.46	+0.7
1,595,683	-	recR	Sama_1312	0.52	-0.7
1,595,704	+	recR	Sama_1312	0.56	+0.1
1,595,704	+	recR	Sama_1312	0.56	-0.3
1,595,704	+	recR	Sama_1312	0.56	-0.0
1,595,704	+	recR	Sama_1312	0.56	-0.3
1,595,704	+	recR	Sama_1312	0.56	-1.3
1,595,705	-	recR	Sama_1312	0.56	-0.6
1,595,705	-	recR	Sama_1312	0.56	+0.5
1,595,705	-	recR	Sama_1312	0.56	+1.3
1,595,705	-	recR	Sama_1312	0.56	-0.7
1,595,705	-	recR	Sama_1312	0.56	-1.9
1,595,808	-	recR	Sama_1312	0.73	-1.3
1,595,835	+	recR	Sama_1312	0.78	-1.9
1,595,835	+	recR	Sama_1312	0.78	-1.1
1,595,835	+	recR	Sama_1312	0.78	-1.7
1,595,835	+	recR	Sama_1312	0.78	-1.5
1,595,835	+	recR	Sama_1312	0.78	+1.3
1,595,836	-	recR	Sama_1312	0.78	-1.5
1,595,836	-	recR	Sama_1312	0.78	-1.3
1,595,836	-	recR	Sama_1312	0.78	-0.9
1,595,836	-	recR	Sama_1312	0.78	-1.0
1,595,866	+	recR	Sama_1312	0.83	-1.6
1,595,967	+				+0.8
1,595,977	-				-0.9
1,596,100	+				-0.1
1,596,100	+				+1.6
1,596,100	+				+0.3
1,596,101	-				+2.6
1,596,101	-				+3.0
1,596,110	+				+1.3
1,596,110	+				+2.2
1,596,111	-				+3.9
1,596,111	-				+3.1
1,596,127	-				+3.4
1,596,149	-				+3.3
1,596,224	-				+4.8
1,596,293	-				+2.8
1,596,319	+				+2.3
1,596,319	+				+4.2
1,596,320	-				+3.5
1,596,320	-				+4.8
1,596,344	+		Sama_1313	0.10	+1.7
1,596,383	+		Sama_1313	0.12	+3.1
1,596,383	+		Sama_1313	0.12	+3.0
1,596,383	+		Sama_1313	0.12	+2.3
1,596,383	+		Sama_1313	0.12	+1.4
1,596,383	+		Sama_1313	0.12	+4.7
1,596,383	+		Sama_1313	0.12	+3.4
1,596,384	-		Sama_1313	0.12	+2.2
1,596,384	-		Sama_1313	0.12	+3.1
1,596,384	-		Sama_1313	0.12	+2.3
1,596,402	+		Sama_1313	0.13	+2.4
1,596,402	+		Sama_1313	0.13	+5.2
1,596,402	+		Sama_1313	0.13	+2.9
1,596,402	+		Sama_1313	0.13	+2.4
1,596,403	-		Sama_1313	0.13	+3.2
1,596,453	+		Sama_1313	0.16	+3.6
1,596,543	+		Sama_1313	0.20	+3.0
1,596,543	+		Sama_1313	0.20	+3.9
1,596,588	+		Sama_1313	0.23	+2.1
1,596,588	+		Sama_1313	0.23	+2.7
1,596,588	+		Sama_1313	0.23	+3.9
1,596,630	+		Sama_1313	0.25	+3.2
1,596,630	+		Sama_1313	0.25	+2.1
1,596,748	+		Sama_1313	0.31	+3.1
1,596,759	+		Sama_1313	0.32	+3.2
1,596,759	+		Sama_1313	0.32	+2.1
1,596,759	+		Sama_1313	0.32	+3.2
1,596,760	-		Sama_1313	0.32	+4.4
1,596,774	-		Sama_1313	0.33	+3.2
1,596,781	+		Sama_1313	0.33	+3.6
1,596,781	+		Sama_1313	0.33	+3.1
1,596,856	-		Sama_1313	0.37	+4.3
1,596,913	+		Sama_1313	0.40	+4.3
1,596,914	-		Sama_1313	0.40	+3.7
1,596,914	-		Sama_1313	0.40	+2.5
1,596,925	+		Sama_1313	0.40	+4.7
1,596,925	+		Sama_1313	0.40	+3.0
1,596,987	+		Sama_1313	0.44	+3.0
1,596,997	+		Sama_1313	0.44	+0.3
1,596,997	+		Sama_1313	0.44	+1.6
1,596,997	+		Sama_1313	0.44	+4.2
1,596,998	-		Sama_1313	0.44	+1.2
1,596,998	-		Sama_1313	0.44	+2.2
1,596,999	+		Sama_1313	0.44	+2.2
1,596,999	+		Sama_1313	0.44	+3.0
1,596,999	+		Sama_1313	0.44	+1.9
1,597,000	-		Sama_1313	0.44	+1.1
1,597,012	+		Sama_1313	0.45	+3.8
1,597,012	+		Sama_1313	0.45	+2.2
1,597,012	+		Sama_1313	0.45	+3.5
1,597,012	+		Sama_1313	0.45	+3.2
1,597,012	+		Sama_1313	0.45	+2.8
1,597,012	+		Sama_1313	0.45	+4.3
1,597,012	+		Sama_1313	0.45	+2.9
1,597,012	+		Sama_1313	0.45	+3.4
1,597,013	-		Sama_1313	0.45	+4.1
1,597,013	-		Sama_1313	0.45	+3.6
1,597,013	-		Sama_1313	0.45	+3.9
1,597,116	+		Sama_1313	0.50	+3.3
1,597,116	+		Sama_1313	0.50	+3.5
1,597,117	-		Sama_1313	0.50	+2.9
1,597,117	-		Sama_1313	0.50	+3.9
1,597,126	+		Sama_1313	0.51	+3.0
1,597,126	+		Sama_1313	0.51	+1.3
1,597,126	+		Sama_1313	0.51	+4.9
1,597,126	+		Sama_1313	0.51	+2.3
1,597,127	-		Sama_1313	0.51	+3.4
1,597,127	-		Sama_1313	0.51	+3.2
1,597,127	-		Sama_1313	0.51	+3.0
1,597,203	+		Sama_1313	0.55	+3.0
1,597,203	+		Sama_1313	0.55	+3.8
1,597,204	-		Sama_1313	0.55	+4.0
1,597,289	-		Sama_1313	0.59	+2.6
1,597,289	-		Sama_1313	0.59	+2.5
1,597,363	-		Sama_1313	0.63	+3.2
1,597,432	+		Sama_1313	0.67	+3.3
1,597,432	+		Sama_1313	0.67	+2.7
1,597,432	+		Sama_1313	0.67	+2.8
1,597,433	-		Sama_1313	0.67	+2.0
1,597,468	+		Sama_1313	0.69	+3.6
1,597,471	+		Sama_1313	0.69	+3.2
1,597,471	+		Sama_1313	0.69	+3.0
1,597,471	+		Sama_1313	0.69	+4.1
1,597,471	+		Sama_1313	0.69	+3.8
1,597,471	+		Sama_1313	0.69	+2.4
1,597,471	+		Sama_1313	0.69	+3.3
1,597,472	-		Sama_1313	0.69	+4.2
1,597,475	+		Sama_1313	0.69	+4.5
1,597,475	+		Sama_1313	0.69	+3.5
1,597,475	+		Sama_1313	0.69	+3.8
1,597,475	+		Sama_1313	0.69	+4.9
1,597,475	+		Sama_1313	0.69	+4.9
1,597,476	-		Sama_1313	0.69	+3.4
1,597,476	-		Sama_1313	0.69	+5.4
1,597,600	+		Sama_1313	0.76	+4.2
1,597,600	+		Sama_1313	0.76	+3.1
1,597,600	+		Sama_1313	0.76	+4.2
1,597,601	-		Sama_1313	0.76	+4.1
1,597,603	-		Sama_1313	0.76	+4.0
1,597,655	+		Sama_1313	0.79	+3.9
1,597,715	+		Sama_1313	0.82	+0.8
1,597,716	-		Sama_1313	0.82	+2.7
1,597,782	+		Sama_1313	0.85	+3.5
1,597,862	+		Sama_1313	0.89	+3.6
1,598,050	-				+2.2
1,598,050	-				+2.6
1,598,115	+				+1.3
1,598,115	+				-1.5
1,598,134	+				+1.0
1,598,134	+				-0.9
1,598,135	-				+1.1
1,598,135	-				+0.4
1,598,149	-				-1.5
1,598,149	-				-1.1
1,598,367	-		Sama_1314	0.26	-0.4
1,598,367	-		Sama_1314	0.26	-0.1
1,598,403	+		Sama_1314	0.31	-0.4
1,598,503	-		Sama_1314	0.42	-0.0
1,598,563	+		Sama_1314	0.49	+0.1
1,598,563	+		Sama_1314	0.49	-1.6
1,598,564	-		Sama_1314	0.49	-1.4
1,598,564	-		Sama_1314	0.49	-1.4
1,598,650	+		Sama_1314	0.59	-0.7
1,598,702	+		Sama_1314	0.65	+1.0
1,598,702	+		Sama_1314	0.65	-0.6
1,598,702	+		Sama_1314	0.65	-0.6
1,598,917	-		Sama_1314	0.89	+1.1
1,598,929	+				-0.9
1,598,965	+				-1.9
1,599,030	+				+0.2
1,599,058	-				-0.4