Strain Fitness in Shewanella amazonensis SB2B around Sama_1310

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,591,263	+		Sama_1308	0.84	-0.9
1,591,313	-				-0.5
1,591,313	-				+0.6
1,591,313	-				-1.2
1,591,313	-				-1.7
1,591,392	+				-0.8
1,591,392	+				+0.2
1,591,399	+				-1.3
1,591,471	+				-0.6
1,591,471	+				-1.1
1,591,471	+				-1.9
1,591,485	+				-1.6
1,591,497	+				+0.3
1,591,497	+				-0.0
1,591,497	+				-0.3
1,591,509	+				+0.2
1,591,510	-				-1.0
1,591,524	+				+0.8
1,591,525	-				+1.5
1,591,525	-				+0.7
1,591,525	-				+1.8
1,591,557	+		Sama_1309	0.13	-1.6
1,591,557	+		Sama_1309	0.13	+0.9
1,591,557	+		Sama_1309	0.13	+1.3
1,591,557	+		Sama_1309	0.13	-0.6
1,591,557	+		Sama_1309	0.13	-1.0
1,591,558	-		Sama_1309	0.13	-0.7
1,591,558	-		Sama_1309	0.13	+0.8
1,591,558	-		Sama_1309	0.13	-0.1
1,591,558	-		Sama_1309	0.13	+1.9
1,591,558	-		Sama_1309	0.13	+1.2
1,591,601	-		Sama_1309	0.21	-1.8
1,591,611	+		Sama_1309	0.23	+1.6
1,591,612	-		Sama_1309	0.23	+1.6
1,591,612	-		Sama_1309	0.23	-1.5
1,591,634	-		Sama_1309	0.27	-0.1
1,591,733	+		Sama_1309	0.45	+0.1
1,591,734	-		Sama_1309	0.45	-1.7
1,591,777	+		Sama_1309	0.53	+0.1
1,591,777	+		Sama_1309	0.53	-1.3
1,591,777	+		Sama_1309	0.53	-0.3
1,591,789	+		Sama_1309	0.55	-0.3
1,591,790	-		Sama_1309	0.56	+0.3
1,591,825	-		Sama_1309	0.62	-0.4
1,591,825	-		Sama_1309	0.62	+0.1
1,591,825	-		Sama_1309	0.62	+0.3
1,591,853	+		Sama_1309	0.67	-2.1
1,591,853	+		Sama_1309	0.67	+0.1
1,591,881	+		Sama_1309	0.72	-0.1
1,591,882	-		Sama_1309	0.73	+0.9
1,591,896	+		Sama_1309	0.75	+0.1
1,591,896	+		Sama_1309	0.75	-0.1
1,592,029	+				-0.1
1,592,030	-				+0.4
1,592,049	+				-1.5
1,592,049	+				-0.6
1,592,049	+				+0.5
1,592,049	+				-0.5
1,592,050	-				-0.5
1,594,896	-				-0.8
1,594,896	-				+0.3
1,594,896	-				+0.4
1,594,918	+				-0.0
1,594,919	-				-0.4
1,594,949	+				+0.1
1,594,950	-				-1.8
1,595,020	+				-2.4
1,595,026	+				-0.3
1,595,026	+				-1.3
1,595,026	+				-0.3
1,595,027	-				-0.3
1,595,181	+		Sama_1311	0.47	-1.0
1,595,221	+		Sama_1311	0.59	+0.3
1,595,481	-	recR	Sama_1312	0.18	-0.9
1,595,552	+	recR	Sama_1312	0.30	-0.9
1,595,644	+	recR	Sama_1312	0.46	-0.8
1,595,645	-	recR	Sama_1312	0.46	+0.7
1,595,683	-	recR	Sama_1312	0.52	-0.7
1,595,704	+	recR	Sama_1312	0.56	+0.1
1,595,704	+	recR	Sama_1312	0.56	-0.3
1,595,704	+	recR	Sama_1312	0.56	-0.0
1,595,704	+	recR	Sama_1312	0.56	-0.3
1,595,704	+	recR	Sama_1312	0.56	-1.3
1,595,705	-	recR	Sama_1312	0.56	-0.6
1,595,705	-	recR	Sama_1312	0.56	+0.5
1,595,705	-	recR	Sama_1312	0.56	+1.3
1,595,705	-	recR	Sama_1312	0.56	-0.7
1,595,705	-	recR	Sama_1312	0.56	-1.9
1,595,808	-	recR	Sama_1312	0.73	-1.3
1,595,835	+	recR	Sama_1312	0.78	-1.9
1,595,835	+	recR	Sama_1312	0.78	-1.1
1,595,835	+	recR	Sama_1312	0.78	-1.7
1,595,835	+	recR	Sama_1312	0.78	-1.5
1,595,835	+	recR	Sama_1312	0.78	+1.3
1,595,836	-	recR	Sama_1312	0.78	-1.5
1,595,836	-	recR	Sama_1312	0.78	-1.3
1,595,836	-	recR	Sama_1312	0.78	-0.9
1,595,836	-	recR	Sama_1312	0.78	-1.0
1,595,866	+	recR	Sama_1312	0.83	-1.6