Strain Fitness in Shewanella amazonensis SB2B around Sama_1253

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,539,660	+		Sama_1252	0.66	-0.2
1,539,660	+		Sama_1252	0.66	-1.7
1,539,660	+		Sama_1252	0.66	-0.1
1,539,660	+		Sama_1252	0.66	-0.9
1,539,661	-		Sama_1252	0.66	+0.8
1,539,661	-		Sama_1252	0.66	+0.4
1,539,661	-		Sama_1252	0.66	+1.3
1,539,667	+		Sama_1252	0.67	+0.5
1,539,667	+		Sama_1252	0.67	+0.2
1,539,667	+		Sama_1252	0.67	+0.9
1,539,667	+		Sama_1252	0.67	-2.5
1,539,667	+		Sama_1252	0.67	+1.5
1,539,668	-		Sama_1252	0.67	-0.1
1,539,668	-		Sama_1252	0.67	-0.3
1,539,697	-		Sama_1252	0.68	-0.9
1,539,759	+		Sama_1252	0.70	+0.1
1,539,759	+		Sama_1252	0.70	-1.2
1,539,759	+		Sama_1252	0.70	-0.5
1,539,759	+		Sama_1252	0.70	-0.7
1,539,759	+		Sama_1252	0.70	-0.7
1,539,760	-		Sama_1252	0.70	+0.2
1,539,760	-		Sama_1252	0.70	+1.6
1,539,760	-		Sama_1252	0.70	+2.6
1,539,760	-		Sama_1252	0.70	-1.8
1,539,760	-		Sama_1252	0.70	-0.3
1,539,764	+		Sama_1252	0.70	+0.0
1,539,764	+		Sama_1252	0.70	+0.5
1,539,764	+		Sama_1252	0.70	+1.5
1,539,764	+		Sama_1252	0.70	+0.7
1,539,765	-		Sama_1252	0.70	+1.1
1,539,765	-		Sama_1252	0.70	+1.8
1,539,824	+		Sama_1252	0.72	+0.6
1,539,827	-		Sama_1252	0.72	-0.7
1,539,862	+		Sama_1252	0.74	+1.3
1,539,863	-		Sama_1252	0.74	+0.8
1,539,863	-		Sama_1252	0.74	+0.9
1,539,863	-		Sama_1252	0.74	-0.4
1,540,015	+		Sama_1252	0.79	-1.7
1,540,044	+		Sama_1252	0.80	+0.5
1,540,044	+		Sama_1252	0.80	-0.4
1,540,045	-		Sama_1252	0.80	-0.7
1,540,071	+		Sama_1252	0.81	-2.6
1,540,071	+		Sama_1252	0.81	-1.2
1,540,072	-		Sama_1252	0.81	+0.5
1,540,090	+		Sama_1252	0.82	-1.0
1,540,109	-		Sama_1252	0.83	+2.5
1,540,109	-		Sama_1252	0.83	+1.0
1,540,159	+		Sama_1252	0.85	+0.6
1,540,159	+		Sama_1252	0.85	+0.4
1,540,159	+		Sama_1252	0.85	+0.0
1,540,159	+		Sama_1252	0.85	+0.5
1,540,171	+		Sama_1252	0.85	-0.2
1,540,171	+		Sama_1252	0.85	+0.9
1,540,171	+		Sama_1252	0.85	-1.0
1,540,171	+		Sama_1252	0.85	+1.3
1,540,171	+		Sama_1252	0.85	+1.4
1,540,172	-		Sama_1252	0.85	+2.9
1,540,172	-		Sama_1252	0.85	-1.4
1,540,172	-		Sama_1252	0.85	+1.1
1,540,172	-		Sama_1252	0.85	+1.1
1,540,177	+		Sama_1252	0.85	-1.0
1,540,178	-		Sama_1252	0.85	-0.1
1,540,178	-		Sama_1252	0.85	+0.6
1,540,187	-		Sama_1252	0.86	+1.1
1,540,187	-		Sama_1252	0.86	+0.8
1,540,219	-		Sama_1252	0.87	+1.0
1,540,291	+		Sama_1252	0.89	-1.7
1,540,292	-		Sama_1252	0.89	+0.8
1,540,292	-		Sama_1252	0.89	+0.7
1,540,303	-		Sama_1252	0.90	+1.3
1,540,303	-		Sama_1252	0.90	+0.8
1,540,303	-		Sama_1252	0.90	-0.3
1,540,303	-		Sama_1252	0.90	+1.8
1,540,303	-		Sama_1252	0.90	+2.5
1,540,313	+				+0.5
1,540,313	+				+3.0
1,540,313	+				+1.8
1,540,314	-				+1.6
1,540,314	-				+1.6
1,540,351	+				+1.1
1,540,351	+				-0.5
1,540,351	+				+0.4
1,540,352	-				+0.0
1,540,400	-				+1.1
1,540,409	+				-0.2
1,540,409	+				+1.0
1,540,416	+				+0.6
1,540,416	+				+1.1
1,540,416	+				+0.5
1,540,420	+				-0.2
1,540,420	+				-2.2
1,540,420	+				+0.8
1,540,420	+				-0.7
1,540,420	+				+0.1
1,540,421	-				+0.6
1,540,421	-				+0.8
1,540,421	-				+1.3
1,540,421	-				+1.7
1,540,421	-				+1.4
1,540,421	-				+2.0
1,540,421	-				+3.0
1,540,421	-				+2.1
1,540,421	-				+0.8
1,540,429	-				-0.7
1,540,462	-				+2.1
1,540,462	-				+2.2
1,540,486	+				+0.1
1,540,486	+				-2.6
1,540,486	+				+1.0
1,540,486	+				+1.4
1,540,486	+				+0.7
1,540,486	+				-0.1
1,540,486	+				-1.0
1,540,486	+				+1.2
1,540,486	+				-0.5
1,540,487	-				-0.5
1,540,487	-				-0.2
1,540,487	-				-0.1
1,540,487	-				+0.9
1,540,487	-				+0.5
1,540,487	-				-1.1
1,540,487	-				+2.0
1,540,487	-				+1.7
1,540,506	+				+0.3
1,540,507	-				+2.5
1,540,507	-				+0.9
1,540,529	-				+2.3
1,540,529	-				+1.6
1,540,552	+				+0.2
1,540,553	-				-0.7
1,540,569	+				-0.4
1,540,569	+				-0.0
1,540,569	+				+1.1
1,540,570	-				+0.2
1,540,576	+				+1.3
1,540,577	-				+1.7
1,540,577	-				-1.2
1,540,592	+				+0.0
1,540,592	+				+0.5
1,540,592	+				+0.6
1,540,593	-				+1.3
1,540,593	-				+1.1
1,540,597	+				+1.1
1,540,598	-				+1.2
1,540,632	+				+0.2
1,540,632	+				+0.3
1,540,633	-				+1.8
1,540,633	-				+0.7
1,540,640	+				-1.7
1,540,640	+				-0.2
1,540,640	+				+1.6
1,540,641	-				+1.0
1,540,641	-				+1.0
1,540,641	-				-0.5
1,540,653	+				+1.8
1,540,669	-				+1.6
1,540,773	-				+1.3
1,540,773	-				+0.8
1,540,838	+		Sama_1253	0.11	+0.8
1,540,869	-		Sama_1253	0.12	-1.0
1,540,881	+		Sama_1253	0.13	+0.9
1,540,884	-		Sama_1253	0.13	+0.2
1,540,907	+		Sama_1253	0.15	+0.1
1,540,908	-		Sama_1253	0.15	+2.1
1,541,037	+		Sama_1253	0.22	+0.4
1,541,154	+		Sama_1253	0.28	+0.9
1,541,154	+		Sama_1253	0.28	+0.4
1,541,160	+		Sama_1253	0.29	+0.3
1,541,160	+		Sama_1253	0.29	+0.3
1,541,173	-		Sama_1253	0.29	+1.1
1,541,256	+		Sama_1253	0.34	+1.5
1,541,256	+		Sama_1253	0.34	+0.8
1,541,257	-		Sama_1253	0.34	+0.5
1,541,257	-		Sama_1253	0.34	+1.6
1,541,378	+		Sama_1253	0.41	+1.9
1,541,378	+		Sama_1253	0.41	+0.1
1,541,386	-		Sama_1253	0.41	+0.3
1,541,422	-		Sama_1253	0.43	-0.7
1,541,429	-		Sama_1253	0.44	+2.3
1,541,429	-		Sama_1253	0.44	+1.1
1,541,439	-		Sama_1253	0.44	+0.7
1,541,442	+		Sama_1253	0.45	+1.3
1,541,443	-		Sama_1253	0.45	+1.0
1,541,443	-		Sama_1253	0.45	+1.3
1,541,443	-		Sama_1253	0.45	+1.3
1,541,481	-		Sama_1253	0.47	+2.9
1,541,494	-		Sama_1253	0.47	+2.8
1,541,537	+		Sama_1253	0.50	+1.1
1,541,538	-		Sama_1253	0.50	+3.4
1,541,586	+		Sama_1253	0.53	+1.3
1,541,632	-		Sama_1253	0.55	+2.3
1,541,685	+		Sama_1253	0.58	+2.3
1,541,686	-		Sama_1253	0.58	-0.2
1,541,744	+		Sama_1253	0.62	+1.4
1,541,760	+		Sama_1253	0.62	+2.3
1,541,761	-		Sama_1253	0.62	-0.4
1,541,773	+		Sama_1253	0.63	+0.3
1,541,773	+		Sama_1253	0.63	+2.3
1,541,774	-		Sama_1253	0.63	-0.8
1,541,782	+		Sama_1253	0.64	+1.3
1,541,783	-		Sama_1253	0.64	+2.3
1,541,821	+		Sama_1253	0.66	+0.1
1,541,821	+		Sama_1253	0.66	+0.1
1,541,822	-		Sama_1253	0.66	+1.6
1,541,822	-		Sama_1253	0.66	+1.6
1,541,823	+		Sama_1253	0.66	+2.0
1,541,823	+		Sama_1253	0.66	+2.1
1,541,823	+		Sama_1253	0.66	+1.5
1,541,850	+		Sama_1253	0.67	+1.2
1,541,850	+		Sama_1253	0.67	+1.0
1,541,850	+		Sama_1253	0.67	+1.1
1,541,850	+		Sama_1253	0.67	+1.4
1,541,851	-		Sama_1253	0.68	+1.8
1,541,851	-		Sama_1253	0.68	+2.5
1,541,859	+		Sama_1253	0.68	+0.9
1,541,925	+		Sama_1253	0.72	-1.5
1,541,925	+		Sama_1253	0.72	+2.2
1,542,065	+		Sama_1253	0.80	-2.1
1,542,177	+		Sama_1253	0.86	+2.3
1,542,178	-		Sama_1253	0.86	+2.2
1,542,203	+		Sama_1253	0.87	+0.5
1,542,203	+		Sama_1253	0.87	+0.2
1,542,251	+				+1.1
1,542,301	+				+1.9
1,542,301	+				+1.5
1,542,302	-				-1.1
1,542,302	-				+1.8
1,542,309	+				+1.0
1,542,346	+				+2.3
1,542,346	+				+2.6
1,542,346	+				+1.5
1,542,346	+				+2.3
1,542,346	+				+1.9
1,542,346	+				+2.4
1,542,346	+				+1.8
1,542,346	+				+1.3
1,542,347	-				+1.5
1,542,347	-				+2.1
1,542,347	-				+1.6
1,542,348	+				+2.0
1,542,348	+				+1.5
1,542,348	+				+1.0
1,542,348	+				+0.6
1,542,348	+				+1.1
1,542,348	+				+1.6
1,542,348	+				+2.1
1,542,348	+				+1.0
1,542,349	-				+1.9
1,542,349	-				-2.1
1,542,349	-				+2.2
1,542,349	-				+1.4
1,542,419	+				+2.6
1,542,457	-				+1.6
1,542,463	-				+3.2
1,542,463	-				+3.0
1,542,463	-				+4.1
1,542,463	-				-1.8
1,542,472	+				+2.3
1,542,607	+				-3.7
1,542,607	+				-1.5
1,542,607	+				-1.7
1,542,607	+				-3.2
1,542,608	-				-2.3
1,542,608	-				-1.0
1,542,608	-				-1.2
1,542,650	+				-1.7
1,542,656	+				-2.0
1,542,705	+				-1.0
1,542,712	+				-0.7
1,542,712	+				-2.0
1,542,712	+				-0.2
1,542,857	+		Sama_1254	0.21	-2.0
1,542,858	-		Sama_1254	0.21	+1.6
1,542,938	+		Sama_1254	0.31	-1.2
1,542,982	+		Sama_1254	0.37	-0.2
1,543,190	+		Sama_1254	0.63	-1.7
1,543,301	+		Sama_1254	0.77	-2.5
1,543,338	-		Sama_1254	0.82	-1.2
1,543,338	-		Sama_1254	0.82	-1.0