Strain Fitness in Shewanella amazonensis SB2B around Sama_1237

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,521,232	+		Sama_1236	0.25	+1.3
1,521,278	+		Sama_1236	0.30	+0.3
1,521,278	+		Sama_1236	0.30	+1.1
1,521,278	+		Sama_1236	0.30	+0.2
1,521,278	+		Sama_1236	0.30	+1.9
1,521,279	-		Sama_1236	0.30	+0.3
1,521,279	-		Sama_1236	0.30	-0.2
1,521,279	-		Sama_1236	0.30	+0.0
1,521,279	-		Sama_1236	0.30	-0.2
1,521,279	-		Sama_1236	0.30	+0.8
1,521,279	-		Sama_1236	0.30	-1.0
1,521,279	-		Sama_1236	0.30	+0.8
1,521,279	-		Sama_1236	0.30	-0.1
1,521,279	-		Sama_1236	0.30	-0.2
1,521,329	+		Sama_1236	0.34	-2.0
1,521,330	-		Sama_1236	0.34	-0.7
1,521,355	+		Sama_1236	0.37	+2.2
1,521,415	-		Sama_1236	0.42	-0.8
1,521,472	+		Sama_1236	0.48	+0.5
1,521,472	+		Sama_1236	0.48	-0.0
1,521,473	-		Sama_1236	0.48	-1.1
1,521,473	-		Sama_1236	0.48	-0.8
1,521,473	-		Sama_1236	0.48	+0.4
1,521,572	+		Sama_1236	0.57	+0.8
1,521,572	+		Sama_1236	0.57	+1.0
1,521,572	+		Sama_1236	0.57	+1.1
1,521,573	-		Sama_1236	0.57	-1.5
1,521,643	-		Sama_1236	0.64	-1.7
1,521,643	-		Sama_1236	0.64	+0.0
1,521,651	+		Sama_1236	0.64	+1.5
1,521,652	-		Sama_1236	0.64	-1.5
1,521,658	+		Sama_1236	0.65	+1.0
1,521,683	-		Sama_1236	0.67	-1.4
1,521,845	-		Sama_1236	0.82	-0.9
1,521,872	+		Sama_1236	0.85	+1.9
1,521,872	+		Sama_1236	0.85	+2.3
1,521,873	-		Sama_1236	0.85	-1.0
1,521,876	+		Sama_1236	0.85	+1.9
1,521,877	-		Sama_1236	0.85	+0.5
1,521,877	-		Sama_1236	0.85	-0.7
1,521,877	-		Sama_1236	0.85	+0.0
1,521,877	-		Sama_1236	0.85	-0.3
1,521,983	+				-1.0
1,522,001	+				-0.4
1,522,002	-				-0.1
1,522,002	-				+0.3
1,522,002	-				-0.5
1,522,047	+				+0.4
1,522,077	-				+0.0
1,522,077	-				-3.7
1,522,090	+				+1.5
1,522,090	+				+0.3
1,522,167	+				+0.3
1,522,190	+				+1.7
1,522,190	+				+0.5
1,522,190	+				+1.5
1,522,190	+				+1.3
1,522,190	+				+0.3
1,522,191	-				-1.7
1,522,192	+				-0.7
1,522,192	+				-0.0
1,522,192	+				-1.8
1,522,192	+				-0.1
1,522,192	+				-2.8
1,522,192	+				+0.0
1,522,192	+				-1.0
1,522,193	-				-2.5
1,522,241	+				-0.2
1,522,483	+		Sama_1237	0.40	-1.8
1,522,502	+		Sama_1237	0.43	-2.0
1,522,514	+		Sama_1237	0.45	-1.5
1,522,514	+		Sama_1237	0.45	-1.5
1,522,550	+		Sama_1237	0.50	-1.7
1,522,550	+		Sama_1237	0.50	-0.7
1,522,573	+		Sama_1237	0.53	-3.1
1,522,690	+		Sama_1237	0.70	-1.4
1,522,720	-		Sama_1237	0.75	-1.6
1,522,890	+				+0.5
1,522,916	+				+0.6
1,522,916	+				+1.4
1,522,916	+				+1.9
1,522,930	+				-0.8
1,522,930	+				-2.9
1,522,930	+				-1.3
1,522,930	+				-0.9
1,522,930	+				+1.8
1,522,930	+				-1.0
1,522,930	+				+0.8
1,522,930	+				-0.2
1,522,930	+				+0.0
1,522,930	+				-2.7
1,522,930	+				-0.7
1,522,931	-				-1.0
1,522,931	-				-1.1
1,522,931	-				-0.2
1,522,931	-				-1.7
1,522,946	+	pspB	Sama_1238	0.12	-2.9
1,522,949	+	pspB	Sama_1238	0.13	+0.4
1,522,949	+	pspB	Sama_1238	0.13	-2.0
1,522,963	+	pspB	Sama_1238	0.19	-1.0
1,522,964	-	pspB	Sama_1238	0.20	-1.3
1,523,171	-				-1.3
1,523,224	+		Sama_1239	0.20	-1.7
1,523,224	+		Sama_1239	0.20	-0.6
1,523,225	-		Sama_1239	0.21	-2.8
1,523,292	+		Sama_1239	0.38	-0.5
1,523,292	+		Sama_1239	0.38	-0.5
1,523,292	+		Sama_1239	0.38	-1.2
1,523,292	+		Sama_1239	0.38	-0.2
1,523,293	-		Sama_1239	0.38	+0.3
1,523,299	+		Sama_1239	0.39	-0.5
1,523,308	+		Sama_1239	0.42	-1.9
1,523,308	+		Sama_1239	0.42	-1.0
1,523,308	+		Sama_1239	0.42	-0.4
1,523,308	+		Sama_1239	0.42	-0.5
1,523,309	-		Sama_1239	0.42	-0.4
1,523,506	+				-0.2
1,523,506	+				-1.5
1,523,506	+				-2.6
1,523,506	+				-0.2
1,523,506	+				-1.3
1,523,507	-				-1.6
1,523,507	-				-0.2
1,523,507	-				-0.5
1,523,507	-				+0.9
1,523,513	+				+0.8
1,523,514	-				-1.5
1,523,529	+				-0.2
1,523,536	+				+1.3
1,523,536	+				-0.1
1,523,536	+				-0.9
1,523,537	-				-1.7
1,523,537	-				+0.3
1,523,537	-				-2.1
1,523,542	-				+0.3
1,523,542	-				+0.8
1,523,545	+				+1.7
1,523,546	-				-0.4
1,523,587	-				-0.3
1,523,587	-				+0.4
1,523,626	+				+1.3
1,523,626	+				+0.2
1,523,626	+				-0.4
1,523,627	-				-0.6
1,523,627	-				-2.2
1,523,627	-				+0.5
1,523,648	-				+0.5
1,523,700	+				+0.8
1,523,700	+				-0.2
1,523,701	-				+1.2
1,523,795	-		Sama_1240	0.12	+0.6