Strain Fitness in Shewanella amazonensis SB2B around Sama_1234

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,517,351	-				+0.0
1,517,383	+				+0.3
1,517,384	-				+0.3
1,517,384	-				-0.7
1,517,464	-		Sama_1233	0.12	-0.7
1,517,489	-		Sama_1233	0.15	+0.2
1,517,551	+		Sama_1233	0.22	-1.0
1,517,810	-		Sama_1233	0.51	-1.0
1,517,983	+		Sama_1233	0.71	-1.0
1,518,055	+		Sama_1233	0.79	-1.0
1,518,244	-				+0.3
1,518,244	-				-0.7
1,518,282	-				+0.0
1,518,354	+		Sama_1234	0.12	-0.2
1,518,367	-		Sama_1234	0.13	-1.2
1,518,556	-		Sama_1234	0.32	-1.2
1,518,596	-		Sama_1234	0.35	-0.7
1,519,065	+		Sama_1234	0.81	-0.7
1,519,156	-		Sama_1234	0.90	-0.7
1,519,156	-		Sama_1234	0.90	-1.0
1,519,212	-				+0.0
1,519,252	-				-1.8
1,519,252	-				-1.2
1,519,252	-				-1.2
1,519,252	-				+0.6
1,519,252	-				-0.5
1,519,256	-				-0.2
1,519,256	-				-1.2
1,519,329	+				-2.0
1,519,330	-				-2.0
1,519,512	+		Sama_1235	0.15	-2.2
1,519,513	-		Sama_1235	0.15	-1.1
1,519,608	-		Sama_1235	0.21	-1.0
1,519,650	-		Sama_1235	0.24	-1.2
1,519,650	-		Sama_1235	0.24	-1.8
1,519,650	-		Sama_1235	0.24	-1.0
1,519,699	-		Sama_1235	0.27	-2.7
1,519,730	+		Sama_1235	0.29	-1.5
1,519,730	+		Sama_1235	0.29	-0.7
1,519,731	-		Sama_1235	0.29	-0.8
1,519,821	-		Sama_1235	0.34	+0.1
1,519,821	-		Sama_1235	0.34	-1.5
1,519,839	-		Sama_1235	0.35	-0.5
1,519,851	-		Sama_1235	0.36	-1.2
1,519,906	+		Sama_1235	0.40	-1.2
1,519,906	+		Sama_1235	0.40	+1.3
1,519,929	+		Sama_1235	0.41	-0.7
1,519,930	-		Sama_1235	0.41	+1.0
1,519,934	-		Sama_1235	0.41	-1.0
1,519,934	-		Sama_1235	0.41	+1.7
1,519,934	-		Sama_1235	0.41	-1.8
1,520,038	-		Sama_1235	0.48	+0.3
1,520,123	-		Sama_1235	0.53	-1.7
1,520,154	-		Sama_1235	0.55	-2.0
1,520,154	-		Sama_1235	0.55	+0.0
1,520,167	+		Sama_1235	0.56	+0.3
1,520,216	+		Sama_1235	0.59	+0.3
1,520,231	+		Sama_1235	0.60	+2.2
1,520,232	-		Sama_1235	0.60	-1.0