Strain Fitness in Shewanella amazonensis SB2B around Sama_1226

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,507,477	+	clpX	Sama_1225	0.32	-1.4
1,507,477	+	clpX	Sama_1225	0.32	-1.0
1,507,521	+	clpX	Sama_1225	0.36	-1.7
1,507,522	-	clpX	Sama_1225	0.36	+0.8
1,507,522	-	clpX	Sama_1225	0.36	-0.7
1,507,575	+	clpX	Sama_1225	0.40	-1.2
1,507,575	+	clpX	Sama_1225	0.40	+0.9
1,507,575	+	clpX	Sama_1225	0.40	-0.7
1,507,706	+	clpX	Sama_1225	0.50	-2.7
1,507,781	+	clpX	Sama_1225	0.56	-3.4
1,507,799	+	clpX	Sama_1225	0.57	-0.5
1,507,885	+	clpX	Sama_1225	0.64	-1.2
1,507,885	+	clpX	Sama_1225	0.64	-2.4
1,507,910	+	clpX	Sama_1225	0.66	-1.0
1,507,910	+	clpX	Sama_1225	0.66	-1.0
1,507,910	+	clpX	Sama_1225	0.66	-2.7
1,507,910	+	clpX	Sama_1225	0.66	-1.1
1,507,956	+	clpX	Sama_1225	0.70	-0.4
1,507,956	+	clpX	Sama_1225	0.70	-1.5
1,507,964	+	clpX	Sama_1225	0.70	+0.0
1,508,030	+	clpX	Sama_1225	0.76	+0.8
1,508,031	-	clpX	Sama_1225	0.76	+0.3
1,508,063	+	clpX	Sama_1225	0.78	-3.6
1,508,210	+	clpX	Sama_1225	0.90	-2.1
1,508,217	+				-1.7
1,508,217	+				-1.2
1,508,217	+				-1.5
1,508,218	-				-0.1
1,508,218	-				-0.8
1,508,340	+				+0.5
1,508,363	+				+0.0
1,508,364	-				-1.0
1,508,369	+				-1.2
1,508,402	+				+1.1
1,508,402	+				-1.8
1,508,402	+				-2.1
1,508,403	-				-1.0
1,508,403	-				-1.0
1,508,403	-				-0.7
1,508,403	-				-2.6
1,508,434	-				-2.9
1,508,435	+				-2.5
1,508,435	+				+1.1
1,508,443	+				-2.1
1,508,443	+				-1.0
1,508,443	+				-2.6
1,508,445	+				+0.2
1,508,445	+				-0.7
1,508,445	+				-2.0
1,508,445	+				+1.3
1,508,445	+				-2.1
1,508,470	+				-1.7
1,508,611	+				+0.3
1,508,734	+		Sama_1226	0.11	-2.2
1,508,734	+		Sama_1226	0.11	-2.5
1,508,734	+		Sama_1226	0.11	-1.0
1,508,735	-		Sama_1226	0.11	-2.2
1,508,777	+		Sama_1226	0.13	+0.3
1,508,892	-		Sama_1226	0.18	-1.7
1,508,986	+		Sama_1226	0.22	-2.2
1,509,152	+		Sama_1226	0.29	-2.6
1,509,155	+		Sama_1226	0.29	-3.4
1,509,303	+		Sama_1226	0.35	-1.2
1,509,303	+		Sama_1226	0.35	-2.6
1,509,303	+		Sama_1226	0.35	-1.5
1,509,303	+		Sama_1226	0.35	-0.7
1,509,307	+		Sama_1226	0.35	-2.0
1,509,307	+		Sama_1226	0.35	-1.0
1,509,307	+		Sama_1226	0.35	-2.6
1,509,307	+		Sama_1226	0.35	-2.0
1,509,307	+		Sama_1226	0.35	-2.1
1,509,308	-		Sama_1226	0.35	-1.2
1,509,350	+		Sama_1226	0.37	-1.2
1,509,351	-		Sama_1226	0.37	-2.5
1,509,351	-		Sama_1226	0.37	-0.7
1,509,351	-		Sama_1226	0.37	-2.1
1,509,351	-		Sama_1226	0.37	-2.5
1,509,426	+		Sama_1226	0.41	-2.6
1,509,430	+		Sama_1226	0.41	-1.4
1,509,431	-		Sama_1226	0.41	-0.7
1,509,443	+		Sama_1226	0.41	-0.7
1,509,443	+		Sama_1226	0.41	-1.0
1,509,469	+		Sama_1226	0.42	-1.5
1,509,479	+		Sama_1226	0.43	-0.7
1,509,480	-		Sama_1226	0.43	-1.5
1,509,595	+		Sama_1226	0.48	-1.8
1,509,599	+		Sama_1226	0.48	-1.5
1,509,600	-		Sama_1226	0.48	-1.5
1,509,662	+		Sama_1226	0.51	-0.8
1,509,662	+		Sama_1226	0.51	-2.0
1,509,663	-		Sama_1226	0.51	-1.2
1,509,852	-		Sama_1226	0.59	-2.1
1,509,987	+		Sama_1226	0.64	-0.2
1,509,988	-		Sama_1226	0.64	-1.0
1,510,018	+		Sama_1226	0.66	+0.3
1,510,019	-		Sama_1226	0.66	-1.0
1,510,073	+		Sama_1226	0.68	-1.5
1,510,074	-		Sama_1226	0.68	-2.0
1,510,074	-		Sama_1226	0.68	-2.2
1,510,146	+		Sama_1226	0.71	-3.0
1,510,226	+		Sama_1226	0.74	-1.2
1,510,226	+		Sama_1226	0.74	-1.7
1,510,254	+		Sama_1226	0.76	-2.4
1,510,254	+		Sama_1226	0.76	-1.0
1,510,346	+		Sama_1226	0.80	-0.7
1,510,347	-		Sama_1226	0.80	-0.5
1,510,347	-		Sama_1226	0.80	-1.2
1,510,591	+		Sama_1226	0.90	-1.2
1,510,591	+		Sama_1226	0.90	-2.1
1,510,591	+		Sama_1226	0.90	-1.7
1,510,591	+		Sama_1226	0.90	-2.5
1,510,844	+				-2.5
1,510,901	+				-2.0
1,510,902	-				-2.5
1,510,967	+				-1.7
1,511,017	+				-1.8
1,511,039	+				-3.0
1,511,358	+				-3.6
1,511,358	+				-3.2
1,511,361	+				-2.2
1,511,377	+				-2.5
1,511,494	+				-1.5
1,511,494	+				-0.2