Strain Fitness in Shewanella amazonensis SB2B around Sama_1223

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,504,303	+				+0.3
1,504,304	-				+0.3
1,504,312	-				+0.8
1,504,313	+				-0.1
1,504,314	-				+1.3
1,504,484	+		Sama_R0046	0.84	+1.9
1,504,499	+				-2.9
1,504,499	+				+2.2
1,504,501	+				+0.1
1,504,501	+				-0.9
1,504,501	+				+0.9
1,504,515	+				-0.5
1,504,554	+				+0.3
1,504,554	+				+0.0
1,504,739	+				+1.2
1,504,774	+				-0.0
1,504,815	+				-1.5
1,504,815	+				-1.0
1,504,919	+				-1.8
1,504,919	+				-1.5
1,504,919	+				-2.1
1,504,919	+				-1.0
1,504,920	-				-1.7
1,504,923	-				-1.5
1,504,942	+				-2.5
1,504,943	-				-1.2
1,504,954	+				-3.6
1,504,954	+				-1.5
1,504,955	-				+0.1
1,504,960	+				-0.5
1,504,960	+				+0.0
1,504,960	+				-1.2
1,504,961	-				+0.9
1,505,060	+				-1.0
1,505,118	-	tig	Sama_1223	0.11	-2.2
1,505,122	+	tig	Sama_1223	0.11	-1.7
1,505,122	+	tig	Sama_1223	0.11	-2.4
1,505,126	+	tig	Sama_1223	0.11	+0.3
1,505,126	+	tig	Sama_1223	0.11	-1.7
1,505,126	+	tig	Sama_1223	0.11	-0.5
1,505,148	+	tig	Sama_1223	0.13	-2.1
1,505,246	+	tig	Sama_1223	0.21	-1.6
1,505,246	+	tig	Sama_1223	0.21	-1.2
1,505,317	+	tig	Sama_1223	0.26	-1.5
1,505,317	+	tig	Sama_1223	0.26	-1.8
1,505,420	+	tig	Sama_1223	0.34	-1.4
1,505,420	+	tig	Sama_1223	0.34	-1.7
1,505,420	+	tig	Sama_1223	0.34	-1.8
1,505,420	+	tig	Sama_1223	0.34	-2.5
1,505,420	+	tig	Sama_1223	0.34	-1.0
1,505,552	+	tig	Sama_1223	0.44	-0.7
1,505,634	+	tig	Sama_1223	0.50	-1.5
1,505,634	+	tig	Sama_1223	0.50	-3.2
1,505,716	+	tig	Sama_1223	0.57	-2.4
1,505,716	+	tig	Sama_1223	0.57	-1.2
1,505,770	+	tig	Sama_1223	0.61	-1.7
1,505,911	+	tig	Sama_1223	0.72	-1.8
1,505,911	+	tig	Sama_1223	0.72	-2.2
1,505,911	+	tig	Sama_1223	0.72	-1.5
1,506,044	+	tig	Sama_1223	0.82	+0.1
1,506,092	+	tig	Sama_1223	0.85	-2.4
1,506,092	+	tig	Sama_1223	0.85	-3.0
1,506,132	+	tig	Sama_1223	0.89	-2.7
1,506,135	+	tig	Sama_1223	0.89	-0.7
1,506,135	+	tig	Sama_1223	0.89	-2.7
1,506,254	+				-2.0
1,506,254	+				+0.5
1,506,314	+				-1.0
1,506,314	+				-0.5
1,506,326	+				-1.2
1,506,326	+				-1.0
1,506,353	+				+0.3
1,506,449	+	clpP	Sama_1224	0.13	-0.7
1,506,449	+	clpP	Sama_1224	0.13	-1.3
1,506,450	-	clpP	Sama_1224	0.13	-1.3
1,506,450	-	clpP	Sama_1224	0.13	-2.7
1,506,458	+	clpP	Sama_1224	0.14	-0.7
1,506,458	+	clpP	Sama_1224	0.14	-0.5
1,506,458	+	clpP	Sama_1224	0.14	+0.0
1,506,458	+	clpP	Sama_1224	0.14	-1.2
1,506,458	+	clpP	Sama_1224	0.14	-0.2
1,506,458	+	clpP	Sama_1224	0.14	-1.1
1,506,459	-	clpP	Sama_1224	0.14	-1.8
1,506,459	-	clpP	Sama_1224	0.14	-2.0
1,506,578	+	clpP	Sama_1224	0.34	-1.1
1,506,578	+	clpP	Sama_1224	0.34	+0.3
1,506,578	+	clpP	Sama_1224	0.34	+0.3
1,506,579	-	clpP	Sama_1224	0.34	-1.5
1,506,584	+	clpP	Sama_1224	0.35	+0.7
1,506,585	-	clpP	Sama_1224	0.35	-2.1
1,506,585	-	clpP	Sama_1224	0.35	+0.3
1,506,629	+	clpP	Sama_1224	0.42	-1.1
1,506,634	+	clpP	Sama_1224	0.43	+0.3
1,506,637	+	clpP	Sama_1224	0.44	-1.0
1,506,637	+	clpP	Sama_1224	0.44	-0.2
1,506,637	+	clpP	Sama_1224	0.44	-1.2
1,506,637	+	clpP	Sama_1224	0.44	-0.4
1,506,637	+	clpP	Sama_1224	0.44	-0.2
1,506,638	-	clpP	Sama_1224	0.44	+0.0
1,506,691	+	clpP	Sama_1224	0.53	-1.8
1,506,691	+	clpP	Sama_1224	0.53	-1.5
1,506,859	-	clpP	Sama_1224	0.80	-1.7
1,506,944	+				-1.5
1,507,023	+				-1.8
1,507,104	+				-1.8