Strain Fitness in Shewanella amazonensis SB2B around Sama_1200

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,470,240	+		Sama_1199	0.39	+0.7
1,470,241	-		Sama_1199	0.39	+0.1
1,470,241	-		Sama_1199	0.39	-2.2
1,470,324	+		Sama_1199	0.46	-0.4
1,470,324	+		Sama_1199	0.46	+0.0
1,470,324	+		Sama_1199	0.46	+1.0
1,470,325	-		Sama_1199	0.46	-1.8
1,470,364	-		Sama_1199	0.49	+1.0
1,470,447	+		Sama_1199	0.55	-2.4
1,470,486	+		Sama_1199	0.58	+1.1
1,470,486	+		Sama_1199	0.58	-1.4
1,470,487	-		Sama_1199	0.58	-0.8
1,470,487	-		Sama_1199	0.58	+0.8
1,470,487	-		Sama_1199	0.58	-2.1
1,470,518	+		Sama_1199	0.60	+0.0
1,470,518	+		Sama_1199	0.60	+0.1
1,470,519	-		Sama_1199	0.60	-0.4
1,470,519	-		Sama_1199	0.60	+1.1
1,470,528	+		Sama_1199	0.61	-0.9
1,470,529	-		Sama_1199	0.61	-1.4
1,470,562	+		Sama_1199	0.64	+0.2
1,470,573	+		Sama_1199	0.64	+0.6
1,470,573	+		Sama_1199	0.64	+0.5
1,470,573	+		Sama_1199	0.64	+0.5
1,470,574	-		Sama_1199	0.65	-0.4
1,470,574	-		Sama_1199	0.65	+1.7
1,470,574	-		Sama_1199	0.65	-0.8
1,470,600	+		Sama_1199	0.67	-0.3
1,470,600	+		Sama_1199	0.67	-1.0
1,470,754	+		Sama_1199	0.78	-0.9
1,470,770	+		Sama_1199	0.79	-0.2
1,470,924	+				-2.3
1,470,924	+				-0.7
1,470,925	-				+0.3
1,471,006	-				+0.4
1,471,031	+				-1.1
1,471,032	-				+1.4
1,471,042	-				-0.3
1,471,094	+				+0.7
1,471,094	+				+1.1
1,471,094	+				-2.3
1,471,212	+				-1.0
1,471,212	+				-1.2
1,471,212	+				-1.2
1,471,213	-				-1.1
1,471,266	+				-2.7
1,471,330	+				-0.4
1,471,346	+				-1.2
1,471,347	-				-1.4
1,471,443	-		Sama_1200	0.15	-2.1
1,471,501	+		Sama_1200	0.19	-2.1
1,471,501	+		Sama_1200	0.19	-1.6
1,471,501	+		Sama_1200	0.19	-1.0
1,471,502	-		Sama_1200	0.19	-0.5
1,471,502	-		Sama_1200	0.19	-1.2
1,471,502	-		Sama_1200	0.19	-0.6
1,471,507	+		Sama_1200	0.19	+0.0
1,471,507	+		Sama_1200	0.19	-1.4
1,471,539	-		Sama_1200	0.21	-1.0
1,471,539	-		Sama_1200	0.21	-1.0
1,471,729	+		Sama_1200	0.32	+0.0
1,471,784	+		Sama_1200	0.36	-1.0
1,471,784	+		Sama_1200	0.36	-1.4
1,471,784	+		Sama_1200	0.36	-1.4
1,471,785	-		Sama_1200	0.36	-0.2
1,471,785	-		Sama_1200	0.36	-0.8
1,471,804	+		Sama_1200	0.37	-1.2
1,471,804	+		Sama_1200	0.37	-0.4
1,471,804	+		Sama_1200	0.37	-1.8
1,471,804	+		Sama_1200	0.37	-2.0
1,471,805	-		Sama_1200	0.37	-1.2
1,471,805	-		Sama_1200	0.37	-1.2
1,471,805	-		Sama_1200	0.37	+0.0
1,471,805	-		Sama_1200	0.37	-1.0
1,471,824	+		Sama_1200	0.38	-1.0
1,471,824	+		Sama_1200	0.38	-1.2
1,471,824	+		Sama_1200	0.38	-1.0
1,471,825	-		Sama_1200	0.38	-0.3
1,471,825	-		Sama_1200	0.38	-1.6
1,471,825	-		Sama_1200	0.38	-0.6
1,471,825	-		Sama_1200	0.38	-1.0
1,471,825	-		Sama_1200	0.38	-1.1
1,471,870	+		Sama_1200	0.41	-0.6
1,471,929	+		Sama_1200	0.44	-0.6
1,471,930	-		Sama_1200	0.44	+0.4
1,471,930	-		Sama_1200	0.44	-1.6
1,471,930	-		Sama_1200	0.44	-2.4
1,472,067	-		Sama_1200	0.52	-0.6
1,472,074	+		Sama_1200	0.53	-2.6
1,472,075	+		Sama_1200	0.53	-1.0
1,472,075	+		Sama_1200	0.53	-1.2
1,472,075	+		Sama_1200	0.53	-2.0
1,472,076	-		Sama_1200	0.53	-1.6
1,472,076	-		Sama_1200	0.53	+0.0
1,472,076	-		Sama_1200	0.53	+0.6
1,472,076	-		Sama_1200	0.53	-0.6
1,472,076	-		Sama_1200	0.53	-0.6
1,472,078	+		Sama_1200	0.53	-1.3
1,472,153	-		Sama_1200	0.58	-0.2
1,472,213	+		Sama_1200	0.61	+1.4
1,472,214	-		Sama_1200	0.61	-2.2
1,472,247	-		Sama_1200	0.63	-1.4
1,472,262	+		Sama_1200	0.64	-1.4
1,472,362	+		Sama_1200	0.70	-1.2
1,472,383	+		Sama_1200	0.71	+0.0
1,472,429	+		Sama_1200	0.74	-2.3
1,472,506	+		Sama_1200	0.78	-0.6
1,472,506	+		Sama_1200	0.78	-1.8
1,472,534	+		Sama_1200	0.80	-1.2
1,472,556	+		Sama_1200	0.81	-1.0
1,472,557	-		Sama_1200	0.82	-1.3
1,472,639	-		Sama_1200	0.86	-1.4
1,472,654	+		Sama_1200	0.87	-2.1
1,472,684	+		Sama_1200	0.89	-0.6
1,472,684	+		Sama_1200	0.89	-1.2
1,472,684	+		Sama_1200	0.89	-0.4
1,472,685	-		Sama_1200	0.89	-1.4
1,472,896	-				+2.8
1,472,896	-				+1.4
1,472,923	+				+0.8
1,472,923	+				+0.6
1,472,924	-				-0.0
1,472,924	-				-1.8
1,472,945	-				+0.8
1,472,972	+				+0.4
1,472,972	+				-1.3
1,473,006	+				-0.4
1,473,006	+				-0.5
1,473,007	-				+0.4
1,473,007	-				-1.6
1,473,007	-				+0.9
1,473,095	+				-0.9
1,473,095	+				-3.1
1,473,095	+				+0.4
1,473,096	-				-0.3
1,473,096	-				-0.2
1,473,140	+				-2.2
1,473,140	+				-0.3
1,473,140	+				+0.8
1,473,141	-				+0.0
1,473,141	-				-1.0
1,473,143	+				+0.6
1,473,143	+				+1.8
1,473,143	+				-1.0
1,473,143	+				-0.4
1,473,143	+				-0.1
1,473,144	-				-0.0
1,473,144	-				+1.4
1,473,155	+				+0.1
1,473,203	+				-0.5
1,473,209	+				-2.5
1,473,209	+				+0.5
1,473,210	-				-0.4
1,473,210	-				-0.3
1,473,210	-				-3.2
1,473,276	-				-2.0
1,473,280	-				+0.0
1,473,302	+				-1.2
1,473,305	+				-1.8
1,473,306	-				-0.5
1,473,314	+				-1.8
1,473,315	-				-0.3
1,473,318	+				+0.2
1,473,319	-				-0.6
1,473,319	-				+0.0
1,473,325	+				-0.6
1,473,325	+				-1.4
1,473,325	+				-0.2
1,473,325	+				-0.9
1,473,326	-				-1.1
1,473,326	-				-0.4
1,473,326	-				-3.0
1,473,326	-				-1.1
1,473,329	+				+1.2
1,473,392	-				-1.2
1,473,536	+				+0.1
1,473,536	+				+0.4
1,473,562	+				-1.9
1,473,562	+				-1.4
1,473,563	-				+0.2
1,473,563	-				-0.1
1,473,569	+				+0.0
1,473,618	+				-1.1
1,473,619	-				+0.9
1,473,619	-				-0.9
1,473,619	-				-1.9
1,473,621	+				-0.4
1,473,621	+				+0.2
1,473,622	-				-2.1
1,473,622	-				+0.0
1,473,622	-				-0.4
1,473,622	-				-0.4
1,473,663	+				+0.3
1,473,663	+				+1.8
1,473,684	+				-0.4
1,473,685	-				-1.8
1,473,685	-				-1.1
1,473,709	-		Sama_1201	0.11	-1.0
1,473,734	+		Sama_1201	0.12	-1.4
1,473,734	+		Sama_1201	0.12	-0.4
1,473,734	+		Sama_1201	0.12	-0.4
1,473,735	-		Sama_1201	0.12	-0.4
1,473,735	-		Sama_1201	0.12	-0.6
1,473,735	-		Sama_1201	0.12	-1.1
1,473,735	-		Sama_1201	0.12	-0.4
1,473,742	+		Sama_1201	0.13	+0.4
1,473,742	+		Sama_1201	0.13	+0.3
1,473,743	-		Sama_1201	0.13	+1.5
1,473,743	-		Sama_1201	0.13	-1.6
1,473,743	-		Sama_1201	0.13	+0.8
1,473,777	+		Sama_1201	0.15	-0.2
1,473,813	+		Sama_1201	0.18	-1.9