Strain Fitness in Shewanella amazonensis SB2B around Sama_1113

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,350,576	+		Sama_1112	0.56	+0.4
1,350,628	-		Sama_1112	0.59	-2.2
1,350,628	-		Sama_1112	0.59	-0.9
1,350,679	-		Sama_1112	0.62	-1.8
1,350,687	+		Sama_1112	0.62	-0.7
1,350,733	+		Sama_1112	0.65	+0.8
1,350,734	-		Sama_1112	0.65	+1.3
1,350,734	-		Sama_1112	0.65	-0.6
1,350,770	-		Sama_1112	0.68	-0.2
1,350,791	-		Sama_1112	0.69	-2.2
1,350,794	+		Sama_1112	0.69	+1.4
1,350,795	-		Sama_1112	0.69	-1.9
1,350,958	-		Sama_1112	0.79	-0.5
1,351,014	-		Sama_1112	0.83	+1.4
1,351,014	-		Sama_1112	0.83	+0.8
1,351,014	-		Sama_1112	0.83	-1.4
1,351,014	-		Sama_1112	0.83	-2.6
1,351,014	-		Sama_1112	0.83	-0.6
1,351,016	+		Sama_1112	0.83	-1.2
1,351,017	-		Sama_1112	0.83	+0.9
1,351,022	+		Sama_1112	0.83	+0.1
1,351,190	+				-1.2
1,351,190	+				+0.3
1,351,191	-				+2.4
1,351,191	-				-1.5
1,351,191	-				-0.2
1,351,191	-				-0.9
1,351,191	-				-1.6
1,351,201	-				-2.3
1,351,201	-				-0.2
1,351,201	-				+0.7
1,351,243	+				-0.4
1,351,262	-				-2.2
1,351,306	-				-0.1
1,351,306	-				-1.9
1,351,306	-				+1.4
1,351,418	+				+1.0
1,351,418	+				+0.4
1,351,418	+				-1.2
1,351,420	+				-0.9
1,351,420	+				+0.5
1,351,420	+				-0.8
1,351,420	+				-2.3
1,351,420	+				-1.6
1,351,521	+				-0.5
1,351,521	+				-0.7
1,351,521	+				+0.9
1,351,567	+				-0.8
1,351,568	-				-0.1
1,351,568	-				-0.3
1,351,568	-				-0.3
1,351,568	-				-2.2
1,351,568	-				+0.7
1,351,568	-				+0.0
1,351,578	+				+0.2
1,351,579	-				-1.2
1,351,739	+				-0.9
1,351,746	-				-0.9
1,351,746	-				-0.9
1,351,746	-				+0.1
1,351,746	-				-0.4
1,351,746	-				-0.2
1,351,746	-				-1.2
1,351,777	+				-0.3
1,351,778	-				-1.9
1,351,778	-				-0.6
1,351,779	+				-0.7
1,351,780	-				+2.7
1,351,880	+				-0.9
1,351,880	+				+0.1
1,351,979	+		Sama_1113	0.11	-2.0
1,351,980	-		Sama_1113	0.11	-0.6
1,351,980	-		Sama_1113	0.11	-0.8
1,352,003	+		Sama_1113	0.11	-1.8
1,352,003	+		Sama_1113	0.11	-0.9
1,352,003	+		Sama_1113	0.11	-0.3
1,352,003	+		Sama_1113	0.11	+0.1
1,352,004	-		Sama_1113	0.11	-0.6
1,352,004	-		Sama_1113	0.11	-1.0
1,352,004	-		Sama_1113	0.11	+0.4
1,352,004	-		Sama_1113	0.11	-0.0
1,352,004	-		Sama_1113	0.11	-0.6
1,352,004	-		Sama_1113	0.11	-0.8
1,352,004	-		Sama_1113	0.11	-0.7
1,352,004	-		Sama_1113	0.11	+1.0
1,352,052	+		Sama_1113	0.12	-1.1
1,352,052	+		Sama_1113	0.12	+0.2
1,352,053	-		Sama_1113	0.12	-0.9
1,352,127	+		Sama_1113	0.13	-2.4
1,352,201	+		Sama_1113	0.14	-0.8
1,352,201	+		Sama_1113	0.14	-0.0
1,352,201	+		Sama_1113	0.14	-1.4
1,352,201	+		Sama_1113	0.14	-0.6
1,352,202	-		Sama_1113	0.14	-0.2
1,352,202	-		Sama_1113	0.14	+0.5
1,352,202	-		Sama_1113	0.14	+0.4
1,352,202	-		Sama_1113	0.14	+0.4
1,352,211	+		Sama_1113	0.15	+0.8
1,352,211	+		Sama_1113	0.15	-2.5
1,352,212	-		Sama_1113	0.15	-1.9
1,352,212	-		Sama_1113	0.15	+1.4
1,352,418	+		Sama_1113	0.18	-1.6
1,352,592	+		Sama_1113	0.21	-1.8
1,352,673	+		Sama_1113	0.23	-0.6
1,352,673	+		Sama_1113	0.23	-0.3
1,352,824	+		Sama_1113	0.25	+0.2
1,352,825	-		Sama_1113	0.25	-0.7
1,352,997	+		Sama_1113	0.28	-1.8
1,352,997	+		Sama_1113	0.28	+2.4
1,352,997	+		Sama_1113	0.28	+0.9
1,352,997	+		Sama_1113	0.28	+0.9
1,352,997	+		Sama_1113	0.28	-0.6
1,352,998	-		Sama_1113	0.28	+0.4
1,352,998	-		Sama_1113	0.28	-0.6
1,353,031	-		Sama_1113	0.29	+1.0
1,353,031	-		Sama_1113	0.29	-2.1
1,353,053	+		Sama_1113	0.29	-3.2
1,353,053	+		Sama_1113	0.29	-0.9
1,353,053	+		Sama_1113	0.29	-0.1
1,353,054	-		Sama_1113	0.29	-2.1
1,353,199	+		Sama_1113	0.32	-0.1
1,353,200	-		Sama_1113	0.32	+1.1
1,353,200	-		Sama_1113	0.32	-1.9
1,353,200	-		Sama_1113	0.32	-1.1
1,353,200	-		Sama_1113	0.32	-0.8
1,353,530	+		Sama_1113	0.38	-1.2
1,353,570	-		Sama_1113	0.38	+0.8
1,353,595	+		Sama_1113	0.39	-0.9
1,353,595	+		Sama_1113	0.39	-2.2
1,353,595	+		Sama_1113	0.39	+0.9
1,353,633	+		Sama_1113	0.40	-0.2
1,353,633	+		Sama_1113	0.40	-1.1
1,353,656	+		Sama_1113	0.40	-0.2
1,353,656	+		Sama_1113	0.40	-0.6
1,353,702	+		Sama_1113	0.41	-2.1
1,353,703	-		Sama_1113	0.41	+0.8
1,353,768	-		Sama_1113	0.42	-0.6
1,353,768	-		Sama_1113	0.42	-0.9
1,353,791	+		Sama_1113	0.42	-2.4
1,353,818	+		Sama_1113	0.43	-1.3
1,353,818	+		Sama_1113	0.43	+0.1
1,353,866	+		Sama_1113	0.44	-2.4
1,353,866	+		Sama_1113	0.44	-1.4
1,353,899	+		Sama_1113	0.44	-0.7
1,353,899	+		Sama_1113	0.44	+0.8
1,353,899	+		Sama_1113	0.44	-1.1
1,353,899	+		Sama_1113	0.44	-1.2
1,353,943	-		Sama_1113	0.45	-0.5
1,354,132	-		Sama_1113	0.48	-0.0
1,354,132	-		Sama_1113	0.48	+1.1
1,354,185	+		Sama_1113	0.49	-1.3
1,354,339	+		Sama_1113	0.52	+0.6
1,354,340	-		Sama_1113	0.52	-1.5
1,354,340	-		Sama_1113	0.52	-1.3
1,354,342	-		Sama_1113	0.52	-0.9
1,354,495	+		Sama_1113	0.55	-2.2
1,354,495	+		Sama_1113	0.55	+0.6
1,354,495	+		Sama_1113	0.55	-0.2
1,354,496	-		Sama_1113	0.55	-2.4
1,354,496	-		Sama_1113	0.55	+0.6
1,354,496	-		Sama_1113	0.55	+2.0
1,354,496	-		Sama_1113	0.55	+0.2
1,354,565	-		Sama_1113	0.56	-1.8
1,354,574	-		Sama_1113	0.56	-0.2
1,354,955	-		Sama_1113	0.63	+0.1
1,355,162	+		Sama_1113	0.66	+0.1
1,355,162	+		Sama_1113	0.66	-0.8
1,355,162	+		Sama_1113	0.66	-2.5
1,355,162	+		Sama_1113	0.66	-0.6
1,355,162	+		Sama_1113	0.66	-1.3
1,355,162	+		Sama_1113	0.66	-2.6
1,355,162	+		Sama_1113	0.66	+0.2
1,355,163	-		Sama_1113	0.66	-1.2
1,355,163	-		Sama_1113	0.66	-0.2
1,355,163	-		Sama_1113	0.66	+0.7
1,355,163	-		Sama_1113	0.66	-0.8
1,355,166	+		Sama_1113	0.66	-1.6
1,355,166	+		Sama_1113	0.66	+0.5
1,355,166	+		Sama_1113	0.66	-0.3
1,355,166	+		Sama_1113	0.66	-0.2
1,355,167	-		Sama_1113	0.66	-0.3
1,355,167	-		Sama_1113	0.66	+1.6
1,355,167	-		Sama_1113	0.66	+1.2
1,355,167	-		Sama_1113	0.66	-0.1
1,355,167	-		Sama_1113	0.66	-0.9
1,355,171	+		Sama_1113	0.67	+0.7
1,355,172	-		Sama_1113	0.67	-0.9
1,355,172	-		Sama_1113	0.67	+0.4
1,355,198	-		Sama_1113	0.67	-1.8
1,355,286	+		Sama_1113	0.69	+1.0
1,355,358	+		Sama_1113	0.70	-1.4
1,355,358	+		Sama_1113	0.70	-0.4
1,355,494	-		Sama_1113	0.72	-0.5
1,355,600	-		Sama_1113	0.74	+0.4
1,355,662	-		Sama_1113	0.75	-0.2
1,355,806	-		Sama_1113	0.78	-1.8
1,355,806	-		Sama_1113	0.78	-0.3
1,355,806	-		Sama_1113	0.78	-0.3
1,355,881	+		Sama_1113	0.79	-0.1
1,355,881	+		Sama_1113	0.79	-0.7
1,355,881	+		Sama_1113	0.79	-0.9
1,355,882	-		Sama_1113	0.79	-2.7
1,355,882	-		Sama_1113	0.79	-2.3
1,356,337	-		Sama_1113	0.87	-1.3
1,356,464	+		Sama_1113	0.89	-1.4
1,356,464	+		Sama_1113	0.89	-0.1
1,356,465	-		Sama_1113	0.89	-1.2
1,356,465	-		Sama_1113	0.89	-0.2
1,356,489	-		Sama_1113	0.90	+0.3
1,356,526	+				-0.5
1,356,650	-				-0.5
1,356,686	+				+0.1
1,356,687	-				-0.6
1,356,687	-				+0.4
1,356,688	+				-1.8
1,356,689	-				-1.4
1,356,721	-				-1.8
1,356,960	-				-1.9
1,356,960	-				+0.1
1,357,146	+				-1.8
1,357,147	-				+0.1
1,357,215	+				-2.9
1,357,215	+				+3.0
1,357,229	+				-0.7
1,357,576	+		Sama_1114	0.20	-1.4
1,357,577	-		Sama_1114	0.20	-0.1
1,357,631	+		Sama_1114	0.23	+0.7
1,357,631	+		Sama_1114	0.23	-0.0
1,357,631	+		Sama_1114	0.23	+0.2
1,357,683	-		Sama_1114	0.26	-2.1
1,357,683	-		Sama_1114	0.26	-0.9
1,357,683	-		Sama_1114	0.26	-0.4
1,357,770	+		Sama_1114	0.30	-2.2
1,357,770	+		Sama_1114	0.30	+1.1
1,357,792	-		Sama_1114	0.31	+1.4
1,357,792	-		Sama_1114	0.31	-1.3
1,357,794	+		Sama_1114	0.31	-0.2
1,357,794	+		Sama_1114	0.31	+0.8
1,357,854	-		Sama_1114	0.34	-1.7
1,358,038	+		Sama_1114	0.43	-1.4
1,358,038	+		Sama_1114	0.43	+0.2