Strain Fitness in Shewanella amazonensis SB2B around Sama_1111

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,346,041	+		Sama_1110	0.17	-2.3
1,346,042	-		Sama_1110	0.17	+0.3
1,346,061	-		Sama_1110	0.23	-0.7
1,346,094	+		Sama_1110	0.31	-0.8
1,346,094	+		Sama_1110	0.31	+1.4
1,346,095	-		Sama_1110	0.32	+0.7
1,346,099	-		Sama_1110	0.33	-1.0
1,346,099	-		Sama_1110	0.33	-0.8
1,346,130	+		Sama_1110	0.41	-2.2
1,346,130	+		Sama_1110	0.41	+0.4
1,346,130	+		Sama_1110	0.41	-0.2
1,346,131	-		Sama_1110	0.41	-0.2
1,346,135	+		Sama_1110	0.42	+0.3
1,346,135	+		Sama_1110	0.42	-0.5
1,346,135	+		Sama_1110	0.42	+0.7
1,346,193	+		Sama_1110	0.58	-0.3
1,346,194	-		Sama_1110	0.58	+0.4
1,346,266	+		Sama_1110	0.78	-1.4
1,346,267	-		Sama_1110	0.78	-1.6
1,346,311	-				-1.6
1,346,316	+				-0.6
1,346,316	+				-0.2
1,346,380	+				+0.2
1,346,380	+				-0.4
1,346,380	+				-0.0
1,346,380	+				+0.1
1,346,380	+				+0.8
1,346,380	+				+0.3
1,346,381	-				+1.4
1,346,381	-				-1.6
1,346,381	-				-0.5
1,346,381	-				+0.9
1,346,381	-				+0.6
1,346,384	+				-1.1
1,346,384	+				-1.7
1,346,384	+				+1.4
1,346,384	+				+0.7
1,346,384	+				+0.2
1,346,384	+				+0.6
1,346,384	+				-0.8
1,346,385	-				-2.1
1,346,385	-				+1.4
1,346,385	-				-1.1
1,346,385	-				+0.3
1,346,386	+				-0.2
1,346,386	+				-1.3
1,346,386	+				-0.8
1,346,387	-				+1.1
1,346,426	+				-0.7
1,346,427	-				+2.4
1,346,436	+				+0.4
1,346,438	+				-1.1
1,346,438	+				+0.4
1,346,438	+				+0.8
1,346,438	+				+1.2
1,346,438	+				-1.6
1,346,438	+				-1.2
1,346,438	+				-3.1
1,346,439	-				+0.7
1,346,439	-				+0.1
1,346,439	-				+1.6
1,346,495	+				+0.2
1,346,497	+				-0.6
1,346,497	+				-0.4
1,346,497	+				-1.1
1,346,498	-				-0.5
1,346,498	-				+1.4
1,346,498	-				-0.2
1,346,498	-				-0.3
1,346,505	+				+0.2
1,346,506	-				+0.4
1,346,546	-				+0.2
1,346,663	+				-0.9
1,346,663	+				+0.1
1,346,663	+				-0.3
1,346,663	+				+0.3
1,346,663	+				+0.2
1,346,664	-				-0.8
1,346,664	-				+0.7
1,346,664	-				-0.6
1,346,678	-				+0.5
1,346,688	-				+0.1
1,346,811	-				+0.4
1,346,811	-				-0.7
1,346,811	-				-0.9
1,346,892	+				+0.2
1,346,892	+				-0.8
1,346,893	-				+0.3
1,346,962	+				-1.3
1,346,963	-				+0.1
1,346,966	+				-0.2
1,346,969	+				+0.2
1,346,973	+				+0.1
1,346,974	-				-0.8
1,346,986	-				-0.4
1,347,008	+				+2.7
1,347,010	+				+0.8
1,347,015	+				+0.3
1,347,167	+				-0.5
1,347,240	-		Sama_1111	0.11	+0.9
1,347,263	+		Sama_1111	0.12	-0.3
1,347,279	+		Sama_1111	0.13	+0.3
1,347,280	-		Sama_1111	0.13	-0.0
1,347,280	-		Sama_1111	0.13	-2.2
1,347,280	-		Sama_1111	0.13	+1.0
1,347,434	+		Sama_1111	0.22	-0.6
1,347,435	-		Sama_1111	0.22	-1.6
1,347,565	+		Sama_1111	0.29	+1.1
1,347,565	+		Sama_1111	0.29	-1.0
1,347,585	+		Sama_1111	0.30	+0.0
1,347,589	-		Sama_1111	0.30	+0.3
1,347,594	+		Sama_1111	0.31	-1.2
1,347,825	+		Sama_1111	0.43	-0.4
1,347,858	+		Sama_1111	0.45	+0.1
1,347,858	+		Sama_1111	0.45	+0.5
1,348,056	+		Sama_1111	0.56	-1.4
1,348,093	+		Sama_1111	0.58	-0.9
1,348,093	+		Sama_1111	0.58	+0.5
1,348,109	+		Sama_1111	0.59	-1.2
1,348,202	+		Sama_1111	0.64	-0.2
1,348,202	+		Sama_1111	0.64	-0.8
1,348,215	+		Sama_1111	0.65	+0.5
1,348,265	+		Sama_1111	0.68	-0.3
1,348,311	+		Sama_1111	0.70	-0.3
1,348,312	-		Sama_1111	0.70	-0.4
1,348,358	+		Sama_1111	0.73	+0.4
1,348,433	-		Sama_1111	0.77	-0.4
1,348,461	+		Sama_1111	0.79	-0.7
1,348,487	+		Sama_1111	0.80	-0.8
1,348,532	+		Sama_1111	0.83	-0.4
1,348,535	+		Sama_1111	0.83	+0.1
1,348,605	-		Sama_1111	0.87	+0.6
1,348,630	+		Sama_1111	0.88	-0.2
1,348,709	+				-0.6
1,348,748	-				+0.8
1,348,805	+				+1.8
1,348,806	-				+1.9
1,348,846	+				+0.4
1,348,856	+				-0.9
1,348,955	+				-1.0
1,348,977	+				-1.5
1,348,978	-				-1.6
1,348,981	+				+0.0
1,348,989	+				+0.8
1,348,989	+				+1.0
1,349,006	+				+0.7
1,349,006	+				-0.9
1,349,017	+				-0.8
1,349,017	+				+0.2
1,349,056	+				-1.6
1,349,057	-				-1.8
1,349,057	-				-0.3
1,349,067	+				-1.6
1,349,097	+				-0.2
1,349,097	+				-2.3
1,349,122	+				+0.3
1,349,122	+				-0.2
1,349,187	+				+1.4
1,349,187	+				-0.9
1,349,233	+				-0.5
1,349,238	+				-1.6
1,349,238	+				+0.0
1,349,238	+				-1.0
1,349,260	-				-1.2
1,349,260	-				+0.5
1,349,312	+				-0.4
1,349,389	-				+0.2
1,349,515	+				+1.7
1,349,515	+				-0.0
1,349,516	-				-0.7
1,349,516	-				-0.2
1,349,607	+				-2.7
1,349,608	-				+1.2
1,349,635	-				-0.5
1,349,664	+				+0.1
1,349,664	+				-0.1
1,349,674	+				+0.7
1,349,675	-				-1.9
1,349,675	-				+0.2
1,349,675	-				-0.9
1,349,675	-				+1.2
1,349,681	+				+0.2
1,349,764	+				-0.6
1,349,768	+				+0.3
1,349,769	-				-0.1
1,349,834	+				-0.6
1,349,834	+				-1.1
1,349,835	-				-0.9
1,349,835	-				-0.9