Strain Fitness in Shewanella amazonensis SB2B around Sama_1104

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,336,072	+		Sama_1103	0.46	-0.6
1,336,072	+		Sama_1103	0.46	+0.6
1,336,072	+		Sama_1103	0.46	+0.4
1,336,072	+		Sama_1103	0.46	+0.5
1,336,072	+		Sama_1103	0.46	-0.8
1,336,072	+		Sama_1103	0.46	+0.4
1,336,073	-		Sama_1103	0.46	-1.3
1,336,073	-		Sama_1103	0.46	-1.4
1,336,080	+		Sama_1103	0.46	+0.1
1,336,208	+		Sama_1103	0.55	-1.9
1,336,208	+		Sama_1103	0.55	+0.4
1,336,291	+		Sama_1103	0.61	-0.1
1,336,291	+		Sama_1103	0.61	-0.4
1,336,291	+		Sama_1103	0.61	+1.4
1,336,291	+		Sama_1103	0.61	-1.1
1,336,311	+		Sama_1103	0.62	-0.3
1,336,311	+		Sama_1103	0.62	-0.2
1,336,312	-		Sama_1103	0.62	+0.7
1,336,381	+		Sama_1103	0.67	-1.6
1,336,381	+		Sama_1103	0.67	+0.4
1,336,381	+		Sama_1103	0.67	-0.6
1,336,382	-		Sama_1103	0.67	+0.6
1,336,382	-		Sama_1103	0.67	-0.4
1,336,404	+		Sama_1103	0.69	+0.3
1,336,404	+		Sama_1103	0.69	+0.8
1,336,448	-		Sama_1103	0.72	-1.2
1,336,459	+		Sama_1103	0.72	+0.4
1,336,459	+		Sama_1103	0.72	-0.1
1,336,459	+		Sama_1103	0.72	-2.8
1,336,459	+		Sama_1103	0.72	-0.4
1,336,459	+		Sama_1103	0.72	-1.0
1,336,459	+		Sama_1103	0.72	-0.1
1,336,459	+		Sama_1103	0.72	-0.6
1,336,460	-		Sama_1103	0.73	-0.0
1,336,460	-		Sama_1103	0.73	-0.2
1,336,460	-		Sama_1103	0.73	+0.6
1,336,460	-		Sama_1103	0.73	-0.3
1,336,460	-		Sama_1103	0.73	-2.6
1,336,460	-		Sama_1103	0.73	+0.9
1,336,545	+		Sama_1103	0.78	+0.1
1,336,546	-		Sama_1103	0.78	-0.3
1,336,593	+		Sama_1103	0.82	-0.1
1,336,594	-		Sama_1103	0.82	+0.7
1,336,644	+		Sama_1103	0.85	+0.3
1,336,646	+		Sama_1103	0.85	+0.0
1,336,646	+		Sama_1103	0.85	-0.1
1,336,719	-				+0.1
1,336,804	+				+0.2
1,336,804	+				+0.8
1,336,833	+				-0.3
1,336,858	+				+0.5
1,336,899	-				+1.6
1,336,934	-				-0.0
1,336,942	+				-0.4
1,336,943	-				+0.7
1,336,943	-				+0.3
1,336,943	-				+0.1
1,336,967	+				-0.3
1,336,968	-				-0.4
1,337,046	+				-1.9
1,337,047	-				-2.2
1,337,047	-				-1.9
1,337,047	-				-1.0
1,337,050	+				+0.8
1,337,050	+				+1.0
1,337,050	+				+0.9
1,337,050	+				-1.7
1,337,051	-				-0.4
1,337,051	-				+0.4
1,337,051	-				+0.5
1,337,051	-				-1.4
1,337,051	-				-1.8
1,337,051	-				-0.7
1,337,074	+				+0.7
1,337,074	+				+0.3
1,337,074	+				+0.4
1,337,075	-				+0.0
1,337,077	+				+0.1
1,337,077	+				+0.7
1,337,095	+		Sama_1104	0.12	+1.4
1,337,111	-		Sama_1104	0.14	-1.8
1,337,154	+		Sama_1104	0.20	-0.4
1,337,154	+		Sama_1104	0.20	-0.0
1,337,155	-		Sama_1104	0.20	+1.3
1,337,184	+		Sama_1104	0.25	+0.3
1,337,184	+		Sama_1104	0.25	-0.6
1,337,185	-		Sama_1104	0.25	-0.3
1,337,185	-		Sama_1104	0.25	-2.3
1,337,188	+		Sama_1104	0.25	+0.1
1,337,205	+		Sama_1104	0.28	+0.9
1,337,206	-		Sama_1104	0.28	-1.0
1,337,206	-		Sama_1104	0.28	+2.9
1,337,215	+		Sama_1104	0.29	+0.7
1,337,288	+		Sama_1104	0.40	-0.5
1,337,377	-		Sama_1104	0.54	-0.9
1,337,377	-		Sama_1104	0.54	+1.7
1,337,377	-		Sama_1104	0.54	-1.3
1,337,391	+		Sama_1104	0.56	+0.8
1,337,391	+		Sama_1104	0.56	-1.5
1,337,391	+		Sama_1104	0.56	-0.3
1,337,391	+		Sama_1104	0.56	-0.8
1,337,392	-		Sama_1104	0.56	-1.1
1,337,392	-		Sama_1104	0.56	+0.6
1,337,392	-		Sama_1104	0.56	-0.4
1,337,392	-		Sama_1104	0.56	-1.6
1,337,392	-		Sama_1104	0.56	-0.6
1,337,455	+		Sama_1104	0.65	-0.3
1,337,463	+		Sama_1104	0.67	+0.3
1,337,463	+		Sama_1104	0.67	-1.8
1,337,498	-		Sama_1104	0.72	-0.0
1,337,595	-		Sama_1104	0.86	+1.9
1,337,625	+				-1.5
1,337,625	+				+0.1
1,337,625	+				-1.2
1,337,625	+				+0.2
1,337,625	+				-0.0
1,337,626	-				+0.1
1,337,626	-				+0.4
1,337,626	-				+0.4
1,337,663	+				-1.4
1,337,664	-				+1.4
1,337,664	-				-0.2
1,337,668	+				-0.6
1,337,668	+				-0.0
1,337,669	-				+0.3
1,337,677	+				-0.2
1,337,678	-				+1.7
1,337,697	+				-0.1
1,337,697	+				+0.8
1,337,698	-				-0.2
1,337,706	+				-0.1
1,337,706	+				+0.2
1,337,706	+				-1.2
1,337,706	+				+0.2
1,337,706	+				-0.5
1,337,706	+				+1.7
1,337,707	-				+0.7
1,337,707	-				+1.1
1,337,953	+				+0.4
1,337,953	+				+0.4
1,337,977	+				-1.4
1,337,977	+				-1.0
1,337,978	-				+3.6
1,338,125	-		Sama_1105	0.12	-1.0
1,338,130	+		Sama_1105	0.12	-1.8
1,338,233	+		Sama_1105	0.15	-0.0
1,338,258	-		Sama_1105	0.16	-1.9
1,338,317	+		Sama_1105	0.18	+0.5
1,338,317	+		Sama_1105	0.18	-0.2
1,338,318	-		Sama_1105	0.18	-0.2
1,338,360	+		Sama_1105	0.19	+0.3
1,338,360	+		Sama_1105	0.19	-1.2
1,338,360	+		Sama_1105	0.19	-1.9
1,338,361	-		Sama_1105	0.19	-0.9
1,338,361	-		Sama_1105	0.19	+0.1
1,338,361	-		Sama_1105	0.19	+0.7
1,338,361	-		Sama_1105	0.19	-0.9
1,338,467	+		Sama_1105	0.22	-1.4
1,338,468	-		Sama_1105	0.22	-0.4
1,338,468	-		Sama_1105	0.22	-0.1
1,338,468	-		Sama_1105	0.22	-0.1
1,338,534	+		Sama_1105	0.24	+0.8
1,338,634	+		Sama_1105	0.27	-0.4
1,338,634	+		Sama_1105	0.27	+0.4
1,338,634	+		Sama_1105	0.27	+0.6
1,338,634	+		Sama_1105	0.27	+0.2
1,338,634	+		Sama_1105	0.27	-0.4
1,338,634	+		Sama_1105	0.27	+2.4
1,338,634	+		Sama_1105	0.27	+0.1
1,338,634	+		Sama_1105	0.27	+0.3
1,338,635	-		Sama_1105	0.27	+0.3
1,338,635	-		Sama_1105	0.27	+0.4
1,338,635	-		Sama_1105	0.27	-0.4
1,338,635	-		Sama_1105	0.27	+1.7
1,338,635	-		Sama_1105	0.27	+1.6