Strain Fitness in Shewanella amazonensis SB2B around Sama_1058

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,280,531	+		Sama_1057	0.71	-0.9
1,280,575	+		Sama_1057	0.73	-0.4
1,280,576	-		Sama_1057	0.73	-2.2
1,280,576	-		Sama_1057	0.73	-1.2
1,280,576	-		Sama_1057	0.73	-1.5
1,280,587	+		Sama_1057	0.73	-1.4
1,280,587	+		Sama_1057	0.73	-0.5
1,280,587	+		Sama_1057	0.73	-0.4
1,280,587	+		Sama_1057	0.73	-0.3
1,280,587	+		Sama_1057	0.73	-1.0
1,280,588	-		Sama_1057	0.73	-0.6
1,280,588	-		Sama_1057	0.73	-1.5
1,280,588	-		Sama_1057	0.73	-0.1
1,280,588	-		Sama_1057	0.73	-1.4
1,280,721	-		Sama_1057	0.78	+1.4
1,280,721	-		Sama_1057	0.78	-0.6
1,280,737	+		Sama_1057	0.79	-0.7
1,280,737	+		Sama_1057	0.79	-2.4
1,280,737	+		Sama_1057	0.79	-1.0
1,280,737	+		Sama_1057	0.79	-1.4
1,280,738	-		Sama_1057	0.79	+1.7
1,280,738	-		Sama_1057	0.79	-1.9
1,280,738	-		Sama_1057	0.79	-1.0
1,280,784	+		Sama_1057	0.80	-0.1
1,280,784	+		Sama_1057	0.80	-0.9
1,280,784	+		Sama_1057	0.80	-0.9
1,280,824	-		Sama_1057	0.82	-2.0
1,280,843	-		Sama_1057	0.82	-1.4
1,280,843	-		Sama_1057	0.82	-1.1
1,280,872	-		Sama_1057	0.83	-1.4
1,280,872	-		Sama_1057	0.83	+1.0
1,280,896	-		Sama_1057	0.84	-0.2
1,280,902	+		Sama_1057	0.84	-1.4
1,280,902	+		Sama_1057	0.84	-0.9
1,280,903	-		Sama_1057	0.84	-0.6
1,280,909	-		Sama_1057	0.85	-1.3
1,281,028	+		Sama_1057	0.89	-0.4
1,281,028	+		Sama_1057	0.89	-1.6
1,281,028	+		Sama_1057	0.89	-1.2
1,281,028	+		Sama_1057	0.89	-0.9
1,281,029	-		Sama_1057	0.89	+0.4
1,281,029	-		Sama_1057	0.89	-1.7
1,281,029	-		Sama_1057	0.89	+0.2
1,281,029	-		Sama_1057	0.89	+1.4
1,281,029	-		Sama_1057	0.89	-0.2
1,281,029	-		Sama_1057	0.89	+0.1
1,281,104	-				+1.6
1,281,151	+				-4.2
1,281,151	+				-0.0
1,281,153	+				-2.8
1,281,154	-				-0.0
1,281,154	-				-1.0
1,281,192	+				-2.2
1,281,246	+				-0.6
1,281,335	+				-0.2
1,281,335	+				-0.1
1,281,340	+				-1.6
1,281,340	+				-0.8
1,281,340	+				-1.8
1,281,340	+				-0.5
1,281,341	-				-0.4
1,281,343	+				+0.2
1,281,343	+				-0.5
1,281,343	+				-0.1
1,281,402	+				-1.4
1,281,437	+				-0.4
1,281,509	-				+0.6
1,281,872	+		Sama_1058	0.22	-0.2
1,281,940	+		Sama_1058	0.26	-1.2
1,282,072	+		Sama_1058	0.34	-1.6
1,282,535	+		Sama_1058	0.64	-0.6
1,282,793	+		Sama_1058	0.80	-0.6
1,282,807	+		Sama_1058	0.81	-1.0
1,283,065	+				+1.6
1,283,065	+				+1.0
1,283,066	-				+0.1
1,283,066	-				+1.0
1,283,066	-				+0.4
1,283,077	+				+0.7
1,283,239	+		Sama_1059	0.35	-0.1
1,283,255	+		Sama_1059	0.39	+0.3
1,283,255	+		Sama_1059	0.39	+1.6
1,283,271	+		Sama_1059	0.42	-0.4
1,283,271	+		Sama_1059	0.42	-0.6
1,283,292	+		Sama_1059	0.47	+2.4
1,283,293	-		Sama_1059	0.48	-1.0
1,283,374	+		Sama_1059	0.67	-0.6
1,283,375	-		Sama_1059	0.67	-0.9
1,283,398	-		Sama_1059	0.73	+0.7
1,283,415	+		Sama_1059	0.77	-0.2
1,283,416	-		Sama_1059	0.77	-1.8
1,283,416	-		Sama_1059	0.77	-0.2
1,283,417	+		Sama_1059	0.77	+1.6
1,283,418	-		Sama_1059	0.78	-2.9
1,283,434	-		Sama_1059	0.82	+1.1
1,283,434	-		Sama_1059	0.82	-1.0
1,283,434	-		Sama_1059	0.82	+1.4
1,283,445	-		Sama_1059	0.84	-1.8
1,283,468	+		Sama_1059	0.90	-0.4
1,283,518	-				-0.7
1,283,547	-				+0.7
1,283,568	+				-1.2
1,283,616	+				+0.4
1,283,616	+				+1.2
1,283,620	+				-0.2
1,283,620	+				-0.9
1,283,620	+				+0.8
1,283,620	+				+0.8
1,283,620	+				+0.9
1,283,621	-				+0.1
1,283,621	-				+1.1
1,283,621	-				+0.4
1,283,621	-				-0.1
1,283,621	-				-1.8
1,283,694	+		Sama_1060	0.13	+0.6
1,283,697	+		Sama_1060	0.13	+0.6
1,283,697	+		Sama_1060	0.13	+0.3
1,283,697	+		Sama_1060	0.13	+0.4
1,283,697	+		Sama_1060	0.13	+0.0
1,283,698	-		Sama_1060	0.13	-0.3
1,283,698	-		Sama_1060	0.13	+0.8
1,283,698	-		Sama_1060	0.13	-0.2
1,283,797	+		Sama_1060	0.29	+1.2
1,283,797	+		Sama_1060	0.29	-0.5
1,283,842	+		Sama_1060	0.37	+0.4
1,283,842	+		Sama_1060	0.37	-2.2
1,283,842	+		Sama_1060	0.37	+0.4
1,283,856	+		Sama_1060	0.39	+0.0
1,283,856	+		Sama_1060	0.39	-1.5
1,283,864	+		Sama_1060	0.40	-0.9
1,283,923	+		Sama_1060	0.50	+0.8
1,283,923	+		Sama_1060	0.50	+0.5
1,283,923	+		Sama_1060	0.50	-0.9
1,283,923	+		Sama_1060	0.50	-2.8
1,283,923	+		Sama_1060	0.50	+1.2
1,283,923	+		Sama_1060	0.50	+1.1
1,283,924	-		Sama_1060	0.50	+0.1
1,283,924	-		Sama_1060	0.50	+0.5
1,283,924	-		Sama_1060	0.50	+0.5
1,283,924	-		Sama_1060	0.50	+1.1
1,283,924	-		Sama_1060	0.50	+0.6
1,283,985	+		Sama_1060	0.60	+0.8
1,283,986	-		Sama_1060	0.60	-1.2
1,284,018	+		Sama_1060	0.66	-2.5
1,284,019	-		Sama_1060	0.66	-0.4
1,284,019	-		Sama_1060	0.66	-0.2
1,284,019	-		Sama_1060	0.66	-0.3
1,284,026	+		Sama_1060	0.67	+0.1
1,284,027	-		Sama_1060	0.67	-1.3
1,284,052	+		Sama_1060	0.71	-0.2
1,284,061	+		Sama_1060	0.73	+0.0
1,284,061	+		Sama_1060	0.73	-1.4
1,284,061	+		Sama_1060	0.73	-0.6
1,284,062	-		Sama_1060	0.73	+0.7
1,284,062	-		Sama_1060	0.73	-0.3
1,284,100	-		Sama_1060	0.79	+0.6