Strain Fitness in Shewanella amazonensis SB2B around Sama_0994

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,204,044	-		Sama_0993	0.77	+0.4
1,204,064	-		Sama_0993	0.77	-2.5
1,204,064	-		Sama_0993	0.77	-0.1
1,204,091	+		Sama_0993	0.78	+0.5
1,204,092	-		Sama_0993	0.78	+1.4
1,204,122	+		Sama_0993	0.79	+0.4
1,204,123	-		Sama_0993	0.79	+0.9
1,204,123	-		Sama_0993	0.79	+1.1
1,204,123	-		Sama_0993	0.79	-1.4
1,204,123	-		Sama_0993	0.79	-0.1
1,204,394	-		Sama_0993	0.86	-0.1
1,204,394	-		Sama_0993	0.86	+0.5
1,204,397	+		Sama_0993	0.86	-0.8
1,204,397	+		Sama_0993	0.86	+0.6
1,204,397	+		Sama_0993	0.86	-0.9
1,204,397	+		Sama_0993	0.86	+0.5
1,204,397	+		Sama_0993	0.86	-1.4
1,204,397	+		Sama_0993	0.86	+1.4
1,204,397	+		Sama_0993	0.86	-0.7
1,204,398	-		Sama_0993	0.86	+0.6
1,204,398	-		Sama_0993	0.86	+0.6
1,204,398	-		Sama_0993	0.86	-1.1
1,204,398	-		Sama_0993	0.86	+0.7
1,204,398	-		Sama_0993	0.86	-0.6
1,204,398	-		Sama_0993	0.86	-0.6
1,204,398	-		Sama_0993	0.86	+0.5
1,204,400	+		Sama_0993	0.86	-1.6
1,204,400	+		Sama_0993	0.86	-1.0
1,204,400	+		Sama_0993	0.86	+0.7
1,204,400	+		Sama_0993	0.86	-0.6
1,204,400	+		Sama_0993	0.86	-0.4
1,204,400	+		Sama_0993	0.86	+0.4
1,204,433	+		Sama_0993	0.87	+1.2
1,204,434	-		Sama_0993	0.87	-2.1
1,204,478	-		Sama_0993	0.88	-0.6
1,204,573	+				-0.9
1,204,573	+				-0.0
1,204,573	+				-1.0
1,204,574	-				-0.7
1,204,574	-				-1.9
1,204,574	-				+0.3
1,204,574	-				+0.2
1,204,574	-				-1.1
1,204,590	+				+0.1
1,204,590	+				-1.0
1,204,590	+				-1.4
1,204,590	+				+0.1
1,204,620	-				-0.1
1,204,649	+				-2.3
1,204,649	+				-2.0
1,204,650	-				+0.4
1,204,650	-				-0.2
1,204,660	+				-0.4
1,204,660	+				+1.3
1,204,660	+				+1.1
1,204,660	+				-0.9
1,204,709	-				-0.1
1,204,718	-				+0.9
1,204,725	+				+0.0
1,204,725	+				-0.2
1,204,725	+				-0.7
1,204,725	+				+0.2
1,204,762	-				+0.4
1,204,762	-				+1.3
1,204,795	+				-0.5
1,204,796	-				+0.0
1,204,843	+				-0.9
1,204,843	+				-0.0
1,204,843	+				+0.2
1,204,843	+				+0.4
1,204,845	+				+0.7
1,204,845	+				-0.9
1,204,845	+				+1.1
1,204,852	-				+1.7
1,204,852	-				-0.6
1,204,915	-				+1.0
1,204,915	-				+1.2
1,204,930	+				-0.8
1,204,930	+				+0.9
1,204,930	+				-1.1
1,204,931	-				+0.2
1,204,931	-				+1.0
1,204,934	+				+0.3
1,204,934	+				-2.6
1,204,938	+				-2.1
1,204,938	+				+1.4
1,204,938	+				-0.3
1,204,939	-				+1.9
1,204,946	-				-0.9
1,204,946	-				+0.3
1,205,029	+				+1.0
1,205,073	+				-2.2
1,205,156	+				-1.9
1,205,157	-				+0.6
1,205,157	-				+1.4
1,205,157	-				+1.3
1,205,157	-				-0.0
1,205,157	-				+0.9
1,205,238	+		Sama_0994	0.16	-0.9
1,205,266	-		Sama_0994	0.18	+1.1
1,205,319	+		Sama_0994	0.22	+0.2
1,205,354	+		Sama_0994	0.24	+0.2
1,205,355	-		Sama_0994	0.24	+0.9
1,205,379	+		Sama_0994	0.26	+1.3
1,205,379	+		Sama_0994	0.26	+1.8
1,205,380	-		Sama_0994	0.26	+0.3
1,205,380	-		Sama_0994	0.26	+1.1
1,205,380	-		Sama_0994	0.26	+2.5
1,205,383	+		Sama_0994	0.26	+2.3
1,205,383	+		Sama_0994	0.26	+1.8
1,205,383	+		Sama_0994	0.26	+2.4
1,205,383	+		Sama_0994	0.26	+0.5
1,205,383	+		Sama_0994	0.26	+3.6
1,205,383	+		Sama_0994	0.26	-3.0
1,205,383	+		Sama_0994	0.26	+1.5
1,205,383	+		Sama_0994	0.26	+0.8
1,205,383	+		Sama_0994	0.26	+1.4
1,205,384	-		Sama_0994	0.27	+1.7
1,205,498	+		Sama_0994	0.35	+2.5
1,205,498	+		Sama_0994	0.35	-1.3
1,205,499	-		Sama_0994	0.35	+3.4
1,205,499	-		Sama_0994	0.35	+2.2
1,205,570	+		Sama_0994	0.40	+1.1
1,205,570	+		Sama_0994	0.40	+2.5
1,205,570	+		Sama_0994	0.40	+1.8
1,205,570	+		Sama_0994	0.40	+1.7
1,205,570	+		Sama_0994	0.40	+0.7
1,205,570	+		Sama_0994	0.40	+2.9
1,205,571	-		Sama_0994	0.40	+2.6
1,205,571	-		Sama_0994	0.40	+1.1
1,205,571	-		Sama_0994	0.40	+2.6
1,205,571	-		Sama_0994	0.40	+1.0
1,205,571	-		Sama_0994	0.40	+0.4
1,205,571	-		Sama_0994	0.40	+2.0
1,205,571	-		Sama_0994	0.40	+2.1
1,205,571	-		Sama_0994	0.40	+3.3
1,205,571	-		Sama_0994	0.40	+2.1
1,205,571	-		Sama_0994	0.40	+1.2
1,205,571	-		Sama_0994	0.40	-0.5
1,205,571	-		Sama_0994	0.40	+1.2
1,205,652	-		Sama_0994	0.46	+2.4
1,205,652	-		Sama_0994	0.46	+3.6
1,205,652	-		Sama_0994	0.46	+1.9
1,205,659	+		Sama_0994	0.47	+2.7
1,205,659	+		Sama_0994	0.47	+2.4
1,205,659	+		Sama_0994	0.47	+1.5
1,205,660	-		Sama_0994	0.47	+1.0
1,205,709	+		Sama_0994	0.50	+2.1
1,205,710	-		Sama_0994	0.51	+1.4
1,205,710	-		Sama_0994	0.51	+2.1
1,205,762	+		Sama_0994	0.54	-0.3
1,205,763	-		Sama_0994	0.54	+3.3
1,205,778	-		Sama_0994	0.56	+3.0
1,205,778	-		Sama_0994	0.56	+1.4
1,205,795	-		Sama_0994	0.57	+1.2
1,205,795	-		Sama_0994	0.57	+1.4
1,205,795	-		Sama_0994	0.57	+2.4
1,205,832	+		Sama_0994	0.60	+3.0
1,205,832	+		Sama_0994	0.60	+2.3
1,205,832	+		Sama_0994	0.60	+2.1
1,205,833	-		Sama_0994	0.60	+1.1
1,205,833	-		Sama_0994	0.60	+0.3
1,205,833	-		Sama_0994	0.60	+1.9
1,205,863	-		Sama_0994	0.62	+1.5
1,205,943	+		Sama_0994	0.68	+0.1
1,205,944	-		Sama_0994	0.68	+1.3
1,205,956	-		Sama_0994	0.69	+2.4
1,206,018	+		Sama_0994	0.73	+2.0
1,206,018	+		Sama_0994	0.73	+0.9
1,206,019	-		Sama_0994	0.73	+1.5
1,206,075	+		Sama_0994	0.77	+1.6
1,206,075	+		Sama_0994	0.77	+0.6
1,206,075	+		Sama_0994	0.77	+2.0
1,206,075	+		Sama_0994	0.77	+0.9
1,206,075	+		Sama_0994	0.77	+2.9
1,206,075	+		Sama_0994	0.77	+3.3
1,206,075	+		Sama_0994	0.77	+1.4
1,206,075	+		Sama_0994	0.77	+1.4
1,206,075	+		Sama_0994	0.77	+1.8
1,206,075	+		Sama_0994	0.77	+3.0
1,206,075	+		Sama_0994	0.77	+1.7
1,206,076	-		Sama_0994	0.77	+1.1
1,206,076	-		Sama_0994	0.77	+1.4
1,206,076	-		Sama_0994	0.77	+1.7
1,206,076	-		Sama_0994	0.77	+2.8
1,206,076	-		Sama_0994	0.77	+3.1
1,206,076	-		Sama_0994	0.77	+1.7
1,206,106	-		Sama_0994	0.80	+2.4
1,206,138	+		Sama_0994	0.82	+2.1
1,206,206	-		Sama_0994	0.87	+1.4
1,206,206	-		Sama_0994	0.87	+0.5
1,206,206	-		Sama_0994	0.87	+0.4
1,206,206	-		Sama_0994	0.87	+0.4
1,206,219	+		Sama_0994	0.88	+1.4
1,206,220	-		Sama_0994	0.88	+1.9
1,206,220	-		Sama_0994	0.88	+0.5
1,206,220	-		Sama_0994	0.88	+2.1
1,206,249	-				+2.3
1,206,253	-				+1.1
1,206,284	+				+0.8
1,206,284	+				+3.0
1,206,284	+				+2.7
1,206,284	+				+0.8
1,206,300	+				+1.9
1,206,300	+				+2.2
1,206,301	-				+1.6
1,206,316	+				+2.5
1,206,317	-				+1.8
1,206,333	+				+1.7
1,206,334	-				+1.0
1,206,395	+				+0.6
1,206,395	+				+1.2
1,206,407	-				-0.1
1,206,409	+				+2.7
1,206,450	+				+2.2
1,206,450	+				+1.4
1,206,450	+				+1.0
1,206,508	+				+1.1
1,206,516	-				+0.4
1,206,516	-				+0.3
1,206,516	-				+0.4
1,206,516	-				+0.6
1,206,530	-				-0.6
1,206,530	-				+0.5
1,206,549	-				-1.0
1,206,573	+				+0.6
1,206,574	-				-2.3
1,206,574	-				-1.6
1,206,600	+				-0.1
1,206,601	-				+0.3
1,206,605	+				+2.0
1,206,606	-				-0.4
1,206,606	-				-1.1
1,206,606	-				-0.1
1,206,615	+				+0.0
1,206,616	-				-1.3
1,206,616	-				-1.1
1,206,634	+				+0.4
1,206,635	-				-0.6
1,206,635	-				-0.6
1,206,643	-				-1.2
1,206,738	-				-2.9
1,206,749	+				+0.7
1,206,749	+				-2.1
1,206,749	+				-0.2
1,206,749	+				-0.2
1,206,750	-				+1.8
1,206,750	-				-0.9
1,206,750	-				+0.2
1,206,756	+				-0.6
1,206,756	+				+0.4
1,206,756	+				-0.1
1,206,757	-				-0.5
1,206,757	-				-0.9
1,206,757	-				-0.6
1,206,760	+				+0.7
1,206,761	-				-0.9
1,206,761	-				-0.5
1,206,761	-				-0.1
1,206,765	+				-0.2
1,206,971	+		Sama_0995	0.13	+0.3
1,206,972	-		Sama_0995	0.13	+1.0
1,206,972	-		Sama_0995	0.13	+0.4
1,206,985	+		Sama_0995	0.14	-1.2
1,206,986	-		Sama_0995	0.14	-1.1
1,206,986	-		Sama_0995	0.14	+0.0
1,206,986	-		Sama_0995	0.14	-0.6
1,206,986	-		Sama_0995	0.14	-1.2
1,206,986	-		Sama_0995	0.14	+0.7
1,206,986	-		Sama_0995	0.14	-0.1
1,207,230	-		Sama_0995	0.30	+0.6
1,207,257	-		Sama_0995	0.32	+0.4
1,207,298	+		Sama_0995	0.34	-0.4