Strain Fitness in Shewanella amazonensis SB2B around Sama_0953

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,151,468	+				+0.5
1,151,469	-				-1.1
1,151,469	-				-1.5
1,151,498	+				-0.3
1,151,517	-				+0.9
1,151,522	+				+0.7
1,151,523	-				+0.1
1,151,523	-				-0.5
1,151,658	+		Sama_0951	0.30	+1.3
1,151,658	+		Sama_0951	0.30	-0.1
1,151,708	+		Sama_0951	0.40	+1.1
1,151,774	+		Sama_0951	0.54	+0.4
1,151,774	+		Sama_0951	0.54	+1.0
1,151,774	+		Sama_0951	0.54	+1.2
1,151,774	+		Sama_0951	0.54	-0.1
1,151,775	-		Sama_0951	0.54	+1.3
1,151,775	-		Sama_0951	0.54	+2.1
1,151,795	+		Sama_0951	0.58	-0.7
1,151,829	+		Sama_0951	0.65	+0.7
1,151,933	+		Sama_0951	0.87	+2.5
1,151,933	+		Sama_0951	0.87	+0.8
1,151,933	+		Sama_0951	0.87	+2.0
1,151,964	+				+0.3
1,151,965	-				+0.8
1,151,965	-				+1.0
1,151,985	+				-0.5
1,151,985	+				+0.4
1,151,985	+				+0.9
1,151,985	+				+1.6
1,151,985	+				-1.7
1,151,985	+				-0.9
1,151,986	-				-0.9
1,151,986	-				-0.0
1,151,986	-				+1.5
1,151,986	-				-1.7
1,151,986	-				+1.0
1,152,031	+				-1.0
1,152,055	+				+1.0
1,152,056	-				+0.8
1,152,076	+				+1.0
1,152,077	-				+0.9
1,152,121	+		Sama_0952	0.15	-0.2
1,152,133	-		Sama_0952	0.19	+0.5
1,152,133	-		Sama_0952	0.19	+0.7
1,152,174	+		Sama_0952	0.33	-0.1
1,152,174	+		Sama_0952	0.33	+0.9
1,152,175	-		Sama_0952	0.33	-0.6
1,152,175	-		Sama_0952	0.33	+1.0
1,152,175	-		Sama_0952	0.33	+0.5
1,152,175	-		Sama_0952	0.33	+0.5
1,152,175	-		Sama_0952	0.33	-0.5
1,152,236	+		Sama_0952	0.54	+1.4
1,152,236	+		Sama_0952	0.54	+1.6
1,152,236	+		Sama_0952	0.54	-1.2
1,152,237	-		Sama_0952	0.54	+0.3
1,152,237	-		Sama_0952	0.54	-0.8
1,152,237	-		Sama_0952	0.54	-2.2
1,152,237	-		Sama_0952	0.54	-0.4
1,152,237	-		Sama_0952	0.54	-0.5
1,152,277	-		Sama_0952	0.67	-0.3
1,152,277	-		Sama_0952	0.67	-1.2
1,152,277	-		Sama_0952	0.67	-0.2
1,152,321	+		Sama_0952	0.82	-2.5
1,152,322	-		Sama_0952	0.82	+0.0
1,152,322	-		Sama_0952	0.82	+2.8
1,152,378	+				+1.0
1,152,397	-				-1.1
1,152,397	-				+0.6
1,152,418	+				+0.3
1,152,418	+				+0.4
1,152,419	-				-0.9
1,152,424	+				+0.3
1,152,424	+				-0.1
1,152,424	+				+1.8
1,152,425	-				-2.7
1,152,425	-				-1.5
1,152,426	+				-1.7
1,152,426	+				-0.5
1,152,426	+				-1.9
1,152,426	+				-1.5
1,152,426	+				+1.3
1,152,426	+				+0.7
1,152,426	+				+0.1
1,152,426	+				-1.0
1,152,427	-				-0.9
1,152,427	-				-3.1
1,152,427	-				-2.8
1,152,427	-				-0.7
1,152,427	-				-0.1
1,152,427	-				-1.5
1,152,427	-				-1.5
1,152,427	-				-1.3
1,152,428	+				+0.3
1,152,428	+				+0.1
1,152,428	+				+0.3
1,152,428	+				-0.5
1,152,428	+				+0.4
1,152,428	+				-0.4
1,152,428	+				+0.9
1,152,428	+				+0.8
1,152,429	-				-2.0
1,152,429	-				-2.0
1,152,429	-				-0.9
1,152,429	-				-2.5
1,152,429	-				-2.7
1,152,429	-				-0.5
1,152,439	+				+0.2
1,152,439	+				-1.5
1,152,439	+				-1.1
1,152,439	+				-0.4
1,152,439	+				+0.2
1,152,439	+				-0.4
1,152,439	+				-0.9
1,152,439	+				-2.4
1,152,439	+				-1.1
1,152,439	+				-0.4
1,152,440	-				-1.1
1,152,440	-				+1.0
1,152,527	+	rrmJ	Sama_0953	0.10	-1.8
1,152,527	+	rrmJ	Sama_0953	0.10	-2.0
1,152,527	+	rrmJ	Sama_0953	0.10	-0.9
1,152,555	+	rrmJ	Sama_0953	0.14	-1.7
1,152,555	+	rrmJ	Sama_0953	0.14	-0.0
1,152,555	+	rrmJ	Sama_0953	0.14	+0.2
1,152,556	-	rrmJ	Sama_0953	0.15	-1.4
1,152,556	-	rrmJ	Sama_0953	0.15	-1.1
1,152,588	+	rrmJ	Sama_0953	0.20	-2.4
1,152,609	+	rrmJ	Sama_0953	0.23	-1.5
1,152,712	+	rrmJ	Sama_0953	0.39	-0.4
1,152,721	+	rrmJ	Sama_0953	0.41	+1.5
1,152,816	+	rrmJ	Sama_0953	0.56	-0.9
1,152,816	+	rrmJ	Sama_0953	0.56	-0.1
1,152,816	+	rrmJ	Sama_0953	0.56	-0.7
1,152,816	+	rrmJ	Sama_0953	0.56	-1.0
1,152,835	+	rrmJ	Sama_0953	0.59	-0.9
1,152,835	+	rrmJ	Sama_0953	0.59	-1.7
1,152,887	+	rrmJ	Sama_0953	0.67	-0.3
1,152,887	+	rrmJ	Sama_0953	0.67	-1.9
1,152,887	+	rrmJ	Sama_0953	0.67	-1.0
1,152,887	+	rrmJ	Sama_0953	0.67	+0.1
1,152,910	+	rrmJ	Sama_0953	0.71	-0.3
1,152,983	+	rrmJ	Sama_0953	0.82	-2.2
1,152,983	+	rrmJ	Sama_0953	0.82	-1.4
1,152,983	+	rrmJ	Sama_0953	0.82	-2.1
1,153,009	+	rrmJ	Sama_0953	0.87	-1.4
1,153,009	+	rrmJ	Sama_0953	0.87	-2.1
1,153,010	-	rrmJ	Sama_0953	0.87	-0.5
1,153,027	+	rrmJ	Sama_0953	0.89	-2.2
1,153,027	+	rrmJ	Sama_0953	0.89	-2.9
1,153,027	+	rrmJ	Sama_0953	0.89	-2.4
1,153,064	+				-3.0
1,153,064	+				-0.7
1,153,064	+				-1.9
1,153,065	-				-1.7
1,153,084	+				-0.7
1,153,084	+				-0.0
1,153,084	+				-1.9
1,153,084	+				+0.4
1,153,084	+				-0.9
1,153,091	+				-0.0
1,153,091	+				-0.4
1,153,091	+				-0.4
1,153,091	+				+1.5
1,153,106	+				-1.6
1,153,106	+				+0.0
1,153,132	+				-0.9