Strain Fitness in Shewanella amazonensis SB2B around Sama_0873

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,061,441	+	nhaR	Sama_0870	0.80	+0.5
1,061,442	-	nhaR	Sama_0870	0.80	-0.3
1,061,442	-	nhaR	Sama_0870	0.80	-0.8
1,061,453	-	nhaR	Sama_0870	0.82	-1.1
1,061,507	+	nhaR	Sama_0870	0.87	+0.1
1,061,507	+	nhaR	Sama_0870	0.87	-1.2
1,061,507	+	nhaR	Sama_0870	0.87	-1.5
1,061,507	+	nhaR	Sama_0870	0.87	+1.0
1,061,507	+	nhaR	Sama_0870	0.87	-1.4
1,061,508	-	nhaR	Sama_0870	0.88	+0.4
1,061,618	+				+0.2
1,061,618	+				+0.9
1,061,619	-				-0.2
1,061,619	-				-0.5
1,061,619	-				-0.5
1,061,634	-				-0.3
1,061,703	+				-0.1
1,061,714	+				-1.2
1,061,714	+				-2.0
1,061,714	+				+0.1
1,061,714	+				-0.8
1,061,714	+				-0.8
1,061,714	+				+0.9
1,061,714	+				+0.2
1,061,715	-				-0.8
1,061,715	-				-0.8
1,061,734	+				-1.3
1,061,735	-				-0.1
1,061,813	+		Sama_0871	0.35	-0.8
1,061,813	+		Sama_0871	0.35	-1.3
1,061,814	-		Sama_0871	0.35	-1.5
1,061,824	+		Sama_0871	0.40	-1.3
1,061,851	-		Sama_0871	0.51	-0.2
1,061,937	+		Sama_0871	0.87	-1.1
1,061,937	+		Sama_0871	0.87	+2.1
1,061,937	+		Sama_0871	0.87	+0.2
1,061,938	-		Sama_0871	0.87	-0.3
1,061,938	-		Sama_0871	0.87	-1.6
1,061,938	-		Sama_0871	0.87	+1.5
1,061,997	+		Sama_0872	0.11	+0.9
1,061,998	-		Sama_0872	0.12	+0.3
1,061,998	-		Sama_0872	0.12	-1.4
1,061,998	-		Sama_0872	0.12	+0.6
1,062,061	+		Sama_0872	0.26	+1.0
1,062,088	+		Sama_0872	0.33	+4.8
1,062,089	-		Sama_0872	0.33	+0.3
1,062,089	-		Sama_0872	0.33	-0.5
1,062,089	-		Sama_0872	0.33	-0.0
1,062,119	+		Sama_0872	0.40	-0.5
1,062,243	-		Sama_0872	0.69	-1.7
1,062,289	+		Sama_0872	0.80	-0.8
1,062,290	-		Sama_0872	0.80	-1.1
1,062,364	+				-1.0
1,063,992	+				-1.7
1,063,992	+				-1.7
1,063,993	-				-1.1
1,063,993	-				-1.8
1,063,993	-				-1.5
1,064,016	-				-2.1
1,064,065	+				+0.2
1,064,066	-				-2.1
1,064,066	-				-1.3
1,064,067	+				+0.9
1,064,067	+				-0.1
1,064,067	+				+0.0
1,064,067	+				-0.8
1,064,067	+				-1.7
1,064,067	+				-0.4
1,064,067	+				-2.0
1,064,068	-				-1.5
1,064,068	-				-0.5
1,064,068	-				-2.2
1,064,068	-				+1.1
1,064,068	-				+0.8
1,064,077	+				-3.0
1,064,077	+				-2.2
1,064,077	+				-0.8
1,064,077	+				-0.5
1,064,078	-				+0.5
1,064,078	-				+0.7
1,064,082	-				-1.5
1,064,082	-				-0.9
1,064,085	+				-2.6
1,064,085	+				-0.1
1,064,086	-				-2.2
1,064,086	-				-0.7
1,064,089	+				-3.1
1,064,090	-				-1.6
1,064,121	-				+0.3
1,064,197	+				-0.3
1,064,261	+		Sama_0874	0.20	-1.3
1,064,319	-		Sama_0874	0.30	-0.5
1,064,462	+		Sama_0874	0.55	-2.5
1,064,463	-		Sama_0874	0.55	-0.8
1,064,482	-		Sama_0874	0.58	-2.7
1,064,571	+		Sama_0874	0.74	+0.5
1,064,571	+		Sama_0874	0.74	-0.5
1,064,605	+		Sama_0874	0.80	-0.8
1,064,605	+		Sama_0874	0.80	-2.7
1,064,612	+		Sama_0874	0.81	-2.7
1,064,612	+		Sama_0874	0.81	-2.1
1,064,612	+		Sama_0874	0.81	-2.2
1,064,621	-		Sama_0874	0.82	-2.8
1,064,735	+				+2.1
1,064,735	+				+3.1
1,064,735	+				+5.3
1,064,760	+				+2.6